Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
RC3H1Q5TC82 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
RC3H1Q5TC82 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RC3H1Q5TC82 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
RC3H1Q5TC82 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC19.25■□□□□ 0.67
RC3H1Q5TC82 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RC3H1Q5TC82 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC19.25■□□□□ 0.67
RC3H1Q5TC82 REXO1L5P-201ENST00000622260 2098 ntBASIC19.24■□□□□ 0.67
RC3H1Q5TC82 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RC3H1Q5TC82 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RC3H1Q5TC82 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
RC3H1Q5TC82 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC19.24■□□□□ 0.67
RC3H1Q5TC82 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
RC3H1Q5TC82 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RC3H1Q5TC82 AC090340.1-201ENST00000620778 4980 ntBASIC19.24■□□□□ 0.67
RC3H1Q5TC82 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
RC3H1Q5TC82 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RC3H1Q5TC82 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
RC3H1Q5TC82 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
RC3H1Q5TC82 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RC3H1Q5TC82 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RC3H1Q5TC82 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC19.24■□□□□ 0.67
RC3H1Q5TC82 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC19.24■□□□□ 0.67
RC3H1Q5TC82 ISCA2P1-201ENST00000425548 448 ntBASIC19.24■□□□□ 0.67
RC3H1Q5TC82 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC19.24■□□□□ 0.67
RC3H1Q5TC82 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC19.24■□□□□ 0.67
RC3H1Q5TC82 HLA-J-204ENST00000495278 958 ntBASIC19.24■□□□□ 0.67
RC3H1Q5TC82 AC019193.1-201ENST00000506678 823 ntBASIC19.24■□□□□ 0.67
RC3H1Q5TC82 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC19.24■□□□□ 0.67
RC3H1Q5TC82 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC19.24■□□□□ 0.67
RC3H1Q5TC82 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC19.24■□□□□ 0.67
RC3H1Q5TC82 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RC3H1Q5TC82 AC242376.1-201ENST00000559033 726 ntBASIC19.24■□□□□ 0.67
RC3H1Q5TC82 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RC3H1Q5TC82 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RC3H1Q5TC82 AC073352.2-201ENST00000609385 439 ntBASIC19.24■□□□□ 0.67
RC3H1Q5TC82 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RC3H1Q5TC82 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
RC3H1Q5TC82 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RC3H1Q5TC82 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RC3H1Q5TC82 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
RC3H1Q5TC82 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RC3H1Q5TC82 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RC3H1Q5TC82 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
RC3H1Q5TC82 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
RC3H1Q5TC82 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
RC3H1Q5TC82 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RC3H1Q5TC82 AL360270.3-201ENST00000609118 1348 ntBASIC19.24■□□□□ 0.67
RC3H1Q5TC82 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
RC3H1Q5TC82 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC19.23■□□□□ 0.67
RC3H1Q5TC82 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
RC3H1Q5TC82 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC19.23■□□□□ 0.67
RC3H1Q5TC82 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
RC3H1Q5TC82 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC19.23■□□□□ 0.67
RC3H1Q5TC82 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC19.23■□□□□ 0.67
RC3H1Q5TC82 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RC3H1Q5TC82 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RC3H1Q5TC82 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC19.23■□□□□ 0.67
RC3H1Q5TC82 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RC3H1Q5TC82 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RC3H1Q5TC82 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RC3H1Q5TC82 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
RC3H1Q5TC82 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RC3H1Q5TC82 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RC3H1Q5TC82 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RC3H1Q5TC82 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
RC3H1Q5TC82 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC19.23■□□□□ 0.67
RC3H1Q5TC82 AC116345.2-201ENST00000512837 523 ntBASIC19.23■□□□□ 0.67
RC3H1Q5TC82 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC19.23■□□□□ 0.67
RC3H1Q5TC82 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC19.23■□□□□ 0.67
RC3H1Q5TC82 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC19.23■□□□□ 0.67
RC3H1Q5TC82 AC138696.2-201ENST00000607376 223 ntBASIC19.23■□□□□ 0.67
RC3H1Q5TC82 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC19.23■□□□□ 0.67
RC3H1Q5TC82 AC103691.2-201ENST00000618824 433 ntBASIC19.23■□□□□ 0.67
RC3H1Q5TC82 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RC3H1Q5TC82 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
RC3H1Q5TC82 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RC3H1Q5TC82 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
RC3H1Q5TC82 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RC3H1Q5TC82 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
RC3H1Q5TC82 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RC3H1Q5TC82 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
RC3H1Q5TC82 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC19.23■□□□□ 0.67
RC3H1Q5TC82 MVK-214ENST00000629016 1591 ntTSL 5 BASIC19.23■□□□□ 0.67
RC3H1Q5TC82 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
RC3H1Q5TC82 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC19.22■□□□□ 0.67
RC3H1Q5TC82 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
RC3H1Q5TC82 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RC3H1Q5TC82 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RC3H1Q5TC82 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
RC3H1Q5TC82 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
RC3H1Q5TC82 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RC3H1Q5TC82 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RC3H1Q5TC82 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
RC3H1Q5TC82 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC19.22■□□□□ 0.67
RC3H1Q5TC82 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
RC3H1Q5TC82 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC19.22■□□□□ 0.67
RC3H1Q5TC82 RBM38-204ENST00000371219 760 ntTSL 2 BASIC19.22■□□□□ 0.67
RC3H1Q5TC82 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC19.22■□□□□ 0.67
RC3H1Q5TC82 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms