Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
COL28A1Q2UY09 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC15.02■□□□□ -0
COL28A1Q2UY09 GRN-222ENST00000639447 1314 ntTSL 2 BASIC15.02■□□□□ -0
COL28A1Q2UY09 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
COL28A1Q2UY09 AC091046.1-201ENST00000331871 207 ntBASIC15.02■□□□□ -0
COL28A1Q2UY09 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC15.02■□□□□ -0
COL28A1Q2UY09 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
COL28A1Q2UY09 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC15.02■□□□□ -0
COL28A1Q2UY09 TPO-206ENST00000382269 1155 ntTSL 5 BASIC15.02■□□□□ -0
COL28A1Q2UY09 AC016694.1-201ENST00000434179 700 ntBASIC15.02■□□□□ -0
COL28A1Q2UY09 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC15.02■□□□□ -0
COL28A1Q2UY09 POU5F1P6-201ENST00000466990 990 ntBASIC15.02■□□□□ -0
COL28A1Q2UY09 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC15.02■□□□□ -0
COL28A1Q2UY09 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC15.02■□□□□ -0
COL28A1Q2UY09 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC15.02■□□□□ -0
COL28A1Q2UY09 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC15.02■□□□□ -0
COL28A1Q2UY09 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC15.02■□□□□ -0
COL28A1Q2UY09 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC15.02■□□□□ -0
COL28A1Q2UY09 AC036164.1-201ENST00000570544 333 ntBASIC15.02■□□□□ -0
COL28A1Q2UY09 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC15.02■□□□□ -0
COL28A1Q2UY09 AC024267.1-201ENST00000582320 895 ntBASIC15.02■□□□□ -0
COL28A1Q2UY09 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
COL28A1Q2UY09 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC15.02■□□□□ -0
COL28A1Q2UY09 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC15.02■□□□□ -0
COL28A1Q2UY09 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC15.02■□□□□ -0
COL28A1Q2UY09 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
COL28A1Q2UY09 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC15.02□□□□□ -0.01
COL28A1Q2UY09 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
COL28A1Q2UY09 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
COL28A1Q2UY09 AC092364.2-201ENST00000596710 2692 ntBASIC15.02□□□□□ -0.01
COL28A1Q2UY09 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
COL28A1Q2UY09 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
COL28A1Q2UY09 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
COL28A1Q2UY09 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
COL28A1Q2UY09 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
COL28A1Q2UY09 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
COL28A1Q2UY09 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC15.02□□□□□ -0.01
COL28A1Q2UY09 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
COL28A1Q2UY09 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
COL28A1Q2UY09 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
COL28A1Q2UY09 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 KRT8P19-201ENST00000551916 1455 ntBASIC15.01□□□□□ -0.01
COL28A1Q2UY09 AC138028.6-201ENST00000616106 1482 ntBASIC15.01□□□□□ -0.01
COL28A1Q2UY09 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 AC092978.1-202ENST00000637590 1327 ntBASIC15.01□□□□□ -0.01
COL28A1Q2UY09 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 AC244669.2-201ENST00000612320 853 ntBASIC15.01□□□□□ -0.01
COL28A1Q2UY09 AL008638.5-201ENST00000623814 1298 ntBASIC15.01□□□□□ -0.01
COL28A1Q2UY09 RHOXF1P1-202ENST00000635473 501 ntBASIC15.01□□□□□ -0.01
COL28A1Q2UY09 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC15.01□□□□□ -0.01
COL28A1Q2UY09 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL28A1Q2UY09 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC15□□□□□ -0.01
COL28A1Q2UY09 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL28A1Q2UY09 AC005622.1-201ENST00000636801 1703 ntBASIC15□□□□□ -0.01
COL28A1Q2UY09 LINC02228-204ENST00000642115 2962 ntBASIC15□□□□□ -0.01
COL28A1Q2UY09 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL28A1Q2UY09 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC15□□□□□ -0.01
COL28A1Q2UY09 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC15□□□□□ -0.01
COL28A1Q2UY09 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
COL28A1Q2UY09 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL28A1Q2UY09 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL28A1Q2UY09 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL28A1Q2UY09 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL28A1Q2UY09 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC15□□□□□ -0.01
COL28A1Q2UY09 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC15□□□□□ -0.01
COL28A1Q2UY09 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC15□□□□□ -0.01
COL28A1Q2UY09 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL28A1Q2UY09 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL28A1Q2UY09 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC15□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms