Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC14.41□□□□□ -0.1
RNF4P78317 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC14.41□□□□□ -0.1
RNF4P78317 RBM7-207ENST00000544582 692 ntTSL 3 BASIC14.41□□□□□ -0.1
RNF4P78317 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
RNF4P78317 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
RNF4P78317 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
RNF4P78317 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RNF4P78317 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC14.41□□□□□ -0.1
RNF4P78317 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
RNF4P78317 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
RNF4P78317 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC14.41□□□□□ -0.1
RNF4P78317 AL033527.5-201ENST00000641382 801 ntBASIC14.41□□□□□ -0.1
RNF4P78317 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC14.41□□□□□ -0.1
RNF4P78317 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
RNF4P78317 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RNF4P78317 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RNF4P78317 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
RNF4P78317 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
RNF4P78317 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
RNF4P78317 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
RNF4P78317 AC090616.6-203ENST00000579186 1945 ntBASIC14.41□□□□□ -0.1
RNF4P78317 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RNF4P78317 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RNF4P78317 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC14.41□□□□□ -0.1
RNF4P78317 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC14.41□□□□□ -0.1
RNF4P78317 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC14.41□□□□□ -0.1
RNF4P78317 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RNF4P78317 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RNF4P78317 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC14.41□□□□□ -0.1
RNF4P78317 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RNF4P78317 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC14.4□□□□□ -0.1
RNF4P78317 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RNF4P78317 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC14.4□□□□□ -0.1
RNF4P78317 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
RNF4P78317 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
RNF4P78317 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC14.4□□□□□ -0.1
RNF4P78317 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RNF4P78317 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
RNF4P78317 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
RNF4P78317 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC14.4□□□□□ -0.1
RNF4P78317 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RNF4P78317 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC14.4□□□□□ -0.1
RNF4P78317 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
RNF4P78317 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
RNF4P78317 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
RNF4P78317 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
RNF4P78317 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RNF4P78317 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC14.4□□□□□ -0.1
RNF4P78317 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC14.4□□□□□ -0.1
RNF4P78317 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RNF4P78317 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
RNF4P78317 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
RNF4P78317 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC14.4□□□□□ -0.1
RNF4P78317 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC14.4□□□□□ -0.1
RNF4P78317 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC14.4□□□□□ -0.1
RNF4P78317 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC14.4□□□□□ -0.1
RNF4P78317 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC14.4□□□□□ -0.1
RNF4P78317 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC14.4□□□□□ -0.1
RNF4P78317 CR383656.12-201ENST00000549567 513 ntBASIC14.4□□□□□ -0.1
RNF4P78317 POLE2-203ENST00000553805 496 ntTSL 2 BASIC14.4□□□□□ -0.1
RNF4P78317 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC14.4□□□□□ -0.1
RNF4P78317 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC14.4□□□□□ -0.1
RNF4P78317 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC14.4□□□□□ -0.1
RNF4P78317 AL359711.2-201ENST00000563105 872 ntBASIC14.4□□□□□ -0.1
RNF4P78317 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC14.4□□□□□ -0.1
RNF4P78317 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC14.4□□□□□ -0.1
RNF4P78317 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
RNF4P78317 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC14.4□□□□□ -0.1
RNF4P78317 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RNF4P78317 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
RNF4P78317 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC14.4□□□□□ -0.1
RNF4P78317 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RNF4P78317 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RNF4P78317 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RNF4P78317 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
RNF4P78317 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RNF4P78317 DRD5P1-201ENST00000456605 1438 ntBASIC14.4□□□□□ -0.1
RNF4P78317 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
RNF4P78317 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RNF4P78317 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC14.4□□□□□ -0.1
RNF4P78317 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
RNF4P78317 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RNF4P78317 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC14.39□□□□□ -0.11
RNF4P78317 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
RNF4P78317 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.11
RNF4P78317 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RNF4P78317 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RNF4P78317 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
RNF4P78317 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
RNF4P78317 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
RNF4P78317 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RNF4P78317 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC14.39□□□□□ -0.11
RNF4P78317 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
RNF4P78317 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
RNF4P78317 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RNF4P78317 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
RNF4P78317 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RNF4P78317 SUN1-204ENST00000403868 978 ntTSL 2 BASIC14.39□□□□□ -0.11
RNF4P78317 SOCS2P1-201ENST00000417727 557 ntBASIC14.39□□□□□ -0.11
RNF4P78317 AC005034.1-201ENST00000426657 489 ntBASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms