Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 IRF3-215ENST00000596822 823 ntTSL 3 BASIC16.27■□□□□ 0.19
COL4A4P53420 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC16.27■□□□□ 0.19
COL4A4P53420 PCBP2-OT1-201ENST00000634357 590 ntBASIC16.27■□□□□ 0.19
COL4A4P53420 AL805961.1-203ENST00000641078 1258 ntBASIC16.27■□□□□ 0.19
COL4A4P53420 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC16.27■□□□□ 0.19
COL4A4P53420 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL4A4P53420 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL4A4P53420 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.26■□□□□ 0.19
COL4A4P53420 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC16.26■□□□□ 0.19
COL4A4P53420 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL4A4P53420 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
COL4A4P53420 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC16.26■□□□□ 0.19
COL4A4P53420 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL4A4P53420 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL4A4P53420 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL4A4P53420 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.26■□□□□ 0.19
COL4A4P53420 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL4A4P53420 DPM3-202ENST00000368399 517 ntBASIC16.26■□□□□ 0.19
COL4A4P53420 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL4A4P53420 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL4A4P53420 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC16.26■□□□□ 0.19
COL4A4P53420 AL353637.1-201ENST00000451571 732 ntBASIC16.26■□□□□ 0.19
COL4A4P53420 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC16.26■□□□□ 0.19
COL4A4P53420 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
COL4A4P53420 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL4A4P53420 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
COL4A4P53420 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC16.26■□□□□ 0.19
COL4A4P53420 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC16.26■□□□□ 0.19
COL4A4P53420 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL4A4P53420 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.26■□□□□ 0.19
COL4A4P53420 AL158070.2-201ENST00000623713 1621 ntBASIC16.26■□□□□ 0.19
COL4A4P53420 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL4A4P53420 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
COL4A4P53420 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL4A4P53420 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL4A4P53420 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL4A4P53420 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC16.26■□□□□ 0.19
COL4A4P53420 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL4A4P53420 LINC02199-201ENST00000506655 2702 ntBASIC16.25■□□□□ 0.19
COL4A4P53420 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
COL4A4P53420 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL4A4P53420 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL4A4P53420 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL4A4P53420 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL4A4P53420 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.25■□□□□ 0.19
COL4A4P53420 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL4A4P53420 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL4A4P53420 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC16.25■□□□□ 0.19
COL4A4P53420 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL4A4P53420 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL4A4P53420 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL4A4P53420 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL4A4P53420 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL4A4P53420 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC16.25■□□□□ 0.19
COL4A4P53420 RPL13AP19-201ENST00000434320 584 ntBASIC16.25■□□□□ 0.19
COL4A4P53420 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL4A4P53420 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL4A4P53420 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
COL4A4P53420 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
COL4A4P53420 BNIP3P13-201ENST00000599968 566 ntBASIC16.25■□□□□ 0.19
COL4A4P53420 AC068587.8-201ENST00000641239 219 ntBASIC16.25■□□□□ 0.19
COL4A4P53420 PRSS30P-206ENST00000641773 873 ntBASIC16.25■□□□□ 0.19
COL4A4P53420 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL4A4P53420 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC16.25■□□□□ 0.19
COL4A4P53420 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL4A4P53420 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL4A4P53420 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.25■□□□□ 0.19
COL4A4P53420 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC16.25■□□□□ 0.19
COL4A4P53420 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL4A4P53420 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
COL4A4P53420 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL4A4P53420 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
COL4A4P53420 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL4A4P53420 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.25■□□□□ 0.19
COL4A4P53420 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL4A4P53420 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
COL4A4P53420 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL4A4P53420 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL4A4P53420 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL4A4P53420 ANKRD30BP2-201ENST00000435744 1610 ntBASIC16.25■□□□□ 0.19
COL4A4P53420 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.24■□□□□ 0.19
COL4A4P53420 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL4A4P53420 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL4A4P53420 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL4A4P53420 RPSAP31-201ENST00000416648 895 ntBASIC16.24■□□□□ 0.19
COL4A4P53420 AC098935.1-201ENST00000446057 611 ntBASIC16.24■□□□□ 0.19
COL4A4P53420 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC16.24■□□□□ 0.19
COL4A4P53420 AC125604.1-201ENST00000496255 707 ntBASIC16.24■□□□□ 0.19
COL4A4P53420 EID1-202ENST00000560490 584 ntTSL 3 BASIC16.24■□□□□ 0.19
COL4A4P53420 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC16.24■□□□□ 0.19
COL4A4P53420 MIR3147-201ENST00000577811 66 ntBASIC16.24■□□□□ 0.19
COL4A4P53420 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL4A4P53420 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC16.24■□□□□ 0.19
COL4A4P53420 MIR6756-201ENST00000616240 63 ntBASIC16.24■□□□□ 0.19
COL4A4P53420 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC16.24■□□□□ 0.19
COL4A4P53420 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC16.24■□□□□ 0.19
COL4A4P53420 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
COL4A4P53420 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC16.24■□□□□ 0.19
COL4A4P53420 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.24■□□□□ 0.19
COL4A4P53420 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms