Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC15.17■□□□□ 0.02
HNF4AP41235 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC15.17■□□□□ 0.02
HNF4AP41235 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HNF4AP41235 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC15.17■□□□□ 0.02
HNF4AP41235 AC100757.3-201ENST00000622361 1406 ntBASIC15.17■□□□□ 0.02
HNF4AP41235 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
HNF4AP41235 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
HNF4AP41235 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HNF4AP41235 PCDHA3-202ENST00000532566 4594 ntBASIC15.16■□□□□ 0.02
HNF4AP41235 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HNF4AP41235 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
HNF4AP41235 AC006058.4-201ENST00000624016 1670 ntBASIC15.16■□□□□ 0.02
HNF4AP41235 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HNF4AP41235 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
HNF4AP41235 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HNF4AP41235 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HNF4AP41235 AC138035.3-201ENST00000622706 2791 ntBASIC15.16■□□□□ 0.02
HNF4AP41235 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
HNF4AP41235 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HNF4AP41235 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HNF4AP41235 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HNF4AP41235 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HNF4AP41235 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.16■□□□□ 0.02
HNF4AP41235 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HNF4AP41235 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.16■□□□□ 0.02
HNF4AP41235 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.16■□□□□ 0.02
HNF4AP41235 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC15.16■□□□□ 0.02
HNF4AP41235 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HNF4AP41235 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HNF4AP41235 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HNF4AP41235 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HNF4AP41235 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC15.16■□□□□ 0.02
HNF4AP41235 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
HNF4AP41235 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC15.16■□□□□ 0.02
HNF4AP41235 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HNF4AP41235 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HNF4AP41235 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HNF4AP41235 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HNF4AP41235 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC15.16■□□□□ 0.02
HNF4AP41235 RPL5P21-201ENST00000404620 815 ntBASIC15.16■□□□□ 0.02
HNF4AP41235 CENPM-206ENST00000407253 818 ntTSL 2 BASIC15.16■□□□□ 0.02
HNF4AP41235 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC15.16■□□□□ 0.02
HNF4AP41235 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC15.16■□□□□ 0.02
HNF4AP41235 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC15.16■□□□□ 0.02
HNF4AP41235 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC15.16■□□□□ 0.02
HNF4AP41235 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
HNF4AP41235 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC15.16■□□□□ 0.02
HNF4AP41235 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC15.16■□□□□ 0.02
HNF4AP41235 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC15.16■□□□□ 0.02
HNF4AP41235 AL390955.2-201ENST00000603032 514 ntBASIC15.16■□□□□ 0.02
HNF4AP41235 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
HNF4AP41235 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HNF4AP41235 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HNF4AP41235 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC15.16■□□□□ 0.02
HNF4AP41235 Z97205.2-201ENST00000564697 1639 ntBASIC15.16■□□□□ 0.02
HNF4AP41235 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC15.16■□□□□ 0.02
HNF4AP41235 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HNF4AP41235 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
HNF4AP41235 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HNF4AP41235 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HNF4AP41235 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
HNF4AP41235 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC15.16■□□□□ 0.02
HNF4AP41235 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HNF4AP41235 PGR-210ENST00000619228 3038 ntTSL 5 BASIC15.16■□□□□ 0.02
HNF4AP41235 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HNF4AP41235 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
HNF4AP41235 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
HNF4AP41235 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC15.16■□□□□ 0.02
HNF4AP41235 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC15.16■□□□□ 0.02
HNF4AP41235 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HNF4AP41235 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.15■□□□□ 0.02
HNF4AP41235 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
HNF4AP41235 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HNF4AP41235 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
HNF4AP41235 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HNF4AP41235 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HNF4AP41235 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC15.15■□□□□ 0.02
HNF4AP41235 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HNF4AP41235 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HNF4AP41235 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC15.15■□□□□ 0.02
HNF4AP41235 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
HNF4AP41235 TK2-221ENST00000620035 5060 ntTSL 2 BASIC15.15■□□□□ 0.02
HNF4AP41235 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HNF4AP41235 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HNF4AP41235 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HNF4AP41235 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HNF4AP41235 AL365209.1-201ENST00000624418 6473 ntBASIC15.15■□□□□ 0.02
HNF4AP41235 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
HNF4AP41235 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
HNF4AP41235 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HNF4AP41235 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.15■□□□□ 0.02
HNF4AP41235 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC15.15■□□□□ 0.02
HNF4AP41235 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HNF4AP41235 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC15.15■□□□□ 0.02
HNF4AP41235 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC15.15■□□□□ 0.02
HNF4AP41235 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms