Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AL442647.2-201ENST00000429864 857 ntBASIC13.26□□□□□ -0.29
USF1P22415 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
USF1P22415 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC13.26□□□□□ -0.29
USF1P22415 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
USF1P22415 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC13.26□□□□□ -0.29
USF1P22415 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC13.26□□□□□ -0.29
USF1P22415 AC092658.1-201ENST00000505836 891 ntBASIC13.26□□□□□ -0.29
USF1P22415 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC13.26□□□□□ -0.29
USF1P22415 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC13.26□□□□□ -0.29
USF1P22415 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
USF1P22415 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC13.26□□□□□ -0.29
USF1P22415 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
USF1P22415 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC13.26□□□□□ -0.29
USF1P22415 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC13.26□□□□□ -0.29
USF1P22415 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC13.26□□□□□ -0.29
USF1P22415 APRT-204ENST00000563655 709 ntTSL 5 BASIC13.26□□□□□ -0.29
USF1P22415 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC13.26□□□□□ -0.29
USF1P22415 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC13.26□□□□□ -0.29
USF1P22415 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC13.26□□□□□ -0.29
USF1P22415 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC13.26□□□□□ -0.29
USF1P22415 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
USF1P22415 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC13.26□□□□□ -0.29
USF1P22415 LINC01115-203ENST00000606068 577 ntBASIC13.26□□□□□ -0.29
USF1P22415 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
USF1P22415 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
USF1P22415 MIR6775-201ENST00000617557 69 ntBASIC13.26□□□□□ -0.29
USF1P22415 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC13.26□□□□□ -0.29
USF1P22415 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
USF1P22415 AL161772.1-201ENST00000610494 4412 ntBASIC13.26□□□□□ -0.29
USF1P22415 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
USF1P22415 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC13.26□□□□□ -0.29
USF1P22415 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
USF1P22415 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
USF1P22415 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
USF1P22415 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
USF1P22415 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
USF1P22415 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC13.26□□□□□ -0.29
USF1P22415 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
USF1P22415 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC13.26□□□□□ -0.29
USF1P22415 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
USF1P22415 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC13.25□□□□□ -0.29
USF1P22415 AL365203.3-201ENST00000609742 2057 ntBASIC13.25□□□□□ -0.29
USF1P22415 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC13.25□□□□□ -0.29
USF1P22415 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
USF1P22415 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC13.25□□□□□ -0.29
USF1P22415 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
USF1P22415 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
USF1P22415 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC13.25□□□□□ -0.29
USF1P22415 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
USF1P22415 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC13.25□□□□□ -0.29
USF1P22415 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC13.25□□□□□ -0.29
USF1P22415 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
USF1P22415 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
USF1P22415 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC13.25□□□□□ -0.29
USF1P22415 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
USF1P22415 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC13.25□□□□□ -0.29
USF1P22415 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
USF1P22415 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
USF1P22415 RPF1-202ENST00000370656 724 ntTSL 2 BASIC13.25□□□□□ -0.29
USF1P22415 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC13.25□□□□□ -0.29
USF1P22415 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
USF1P22415 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
USF1P22415 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
USF1P22415 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC13.25□□□□□ -0.29
USF1P22415 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC13.25□□□□□ -0.29
USF1P22415 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC13.25□□□□□ -0.29
USF1P22415 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
USF1P22415 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
USF1P22415 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC13.25□□□□□ -0.29
USF1P22415 MIR4259-201ENST00000584466 101 ntBASIC13.25□□□□□ -0.29
USF1P22415 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC13.25□□□□□ -0.29
USF1P22415 AC233724.13-201ENST00000598383 410 ntBASIC13.25□□□□□ -0.29
USF1P22415 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC13.25□□□□□ -0.29
USF1P22415 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC13.25□□□□□ -0.29
USF1P22415 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC13.25□□□□□ -0.29
USF1P22415 AL158212.4-201ENST00000624062 1286 ntBASIC13.25□□□□□ -0.29
USF1P22415 CU634019.7-201ENST00000624153 1185 ntBASIC13.25□□□□□ -0.29
USF1P22415 FP236241.2-201ENST00000624906 1185 ntBASIC13.25□□□□□ -0.29
USF1P22415 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
USF1P22415 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC13.25□□□□□ -0.29
USF1P22415 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
USF1P22415 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC13.25□□□□□ -0.29
USF1P22415 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC13.25□□□□□ -0.29
USF1P22415 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
USF1P22415 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
USF1P22415 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
USF1P22415 BLK-205ENST00000529894 2017 ntTSL 5 BASIC13.25□□□□□ -0.29
USF1P22415 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
USF1P22415 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
USF1P22415 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
USF1P22415 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC13.25□□□□□ -0.29
USF1P22415 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
USF1P22415 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC13.25□□□□□ -0.29
USF1P22415 AC105917.1-201ENST00000506637 2539 ntBASIC13.24□□□□□ -0.29
USF1P22415 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
USF1P22415 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
USF1P22415 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC13.24□□□□□ -0.29
USF1P22415 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
USF1P22415 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
USF1P22415 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms