Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AC022616.1-201ENST00000518688 554 ntBASIC15.98■□□□□ 0.15
HMGA1P17096 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
HMGA1P17096 FAM8A2P-201ENST00000528813 1142 ntBASIC15.98■□□□□ 0.15
HMGA1P17096 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC15.98■□□□□ 0.15
HMGA1P17096 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
HMGA1P17096 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC15.98■□□□□ 0.15
HMGA1P17096 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC15.98■□□□□ 0.15
HMGA1P17096 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
HMGA1P17096 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HMGA1P17096 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HMGA1P17096 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HMGA1P17096 CICP11-201ENST00000434745 2827 ntBASIC15.98■□□□□ 0.15
HMGA1P17096 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC15.98■□□□□ 0.15
HMGA1P17096 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HMGA1P17096 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
HMGA1P17096 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HMGA1P17096 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC15.97■□□□□ 0.15
HMGA1P17096 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HMGA1P17096 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGA1P17096 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGA1P17096 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGA1P17096 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGA1P17096 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC15.97■□□□□ 0.15
HMGA1P17096 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGA1P17096 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC15.97■□□□□ 0.15
HMGA1P17096 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HMGA1P17096 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC15.97■□□□□ 0.15
HMGA1P17096 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
HMGA1P17096 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGA1P17096 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGA1P17096 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
HMGA1P17096 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HMGA1P17096 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
HMGA1P17096 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGA1P17096 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGA1P17096 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HMGA1P17096 POM121L8P-201ENST00000417732 1281 ntBASIC15.97■□□□□ 0.15
HMGA1P17096 POM121L9P-203ENST00000441984 1285 ntBASIC15.97■□□□□ 0.15
HMGA1P17096 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC15.97■□□□□ 0.15
HMGA1P17096 AGER-214ENST00000538695 487 ntTSL 2 BASIC15.97■□□□□ 0.15
HMGA1P17096 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC15.97■□□□□ 0.15
HMGA1P17096 C2orf69P2-201ENST00000562032 1123 ntBASIC15.97■□□□□ 0.15
HMGA1P17096 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC15.97■□□□□ 0.15
HMGA1P17096 MIR4741-201ENST00000579822 90 ntBASIC15.97■□□□□ 0.15
HMGA1P17096 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HMGA1P17096 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HMGA1P17096 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGA1P17096 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC15.97■□□□□ 0.15
HMGA1P17096 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGA1P17096 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC15.97■□□□□ 0.15
HMGA1P17096 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC15.97■□□□□ 0.15
HMGA1P17096 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGA1P17096 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HMGA1P17096 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HMGA1P17096 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
HMGA1P17096 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC15.97■□□□□ 0.15
HMGA1P17096 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGA1P17096 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC15.97■□□□□ 0.15
HMGA1P17096 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGA1P17096 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGA1P17096 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGA1P17096 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HMGA1P17096 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC15.97■□□□□ 0.15
HMGA1P17096 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
HMGA1P17096 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HMGA1P17096 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
HMGA1P17096 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGA1P17096 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HMGA1P17096 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGA1P17096 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGA1P17096 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGA1P17096 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HMGA1P17096 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HMGA1P17096 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HMGA1P17096 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGA1P17096 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC15.96■□□□□ 0.15
HMGA1P17096 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGA1P17096 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HMGA1P17096 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HMGA1P17096 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGA1P17096 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
HMGA1P17096 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC15.96■□□□□ 0.15
HMGA1P17096 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HMGA1P17096 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGA1P17096 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC15.96■□□□□ 0.15
HMGA1P17096 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HMGA1P17096 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
HMGA1P17096 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGA1P17096 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGA1P17096 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HMGA1P17096 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC15.96■□□□□ 0.15
HMGA1P17096 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC15.96■□□□□ 0.15
HMGA1P17096 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC15.96■□□□□ 0.15
HMGA1P17096 AC245100.3-201ENST00000441281 285 ntBASIC15.96■□□□□ 0.15
HMGA1P17096 PFN1P12-201ENST00000455938 534 ntBASIC15.96■□□□□ 0.15
HMGA1P17096 ACR-203ENST00000529621 708 ntTSL 5 BASIC15.96■□□□□ 0.15
HMGA1P17096 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC15.96■□□□□ 0.15
HMGA1P17096 DUX4L47-201ENST00000566374 394 ntBASIC15.96■□□□□ 0.15
HMGA1P17096 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC15.96■□□□□ 0.15
HMGA1P17096 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC15.96■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms