Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL3A1P02461 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC20.19■□□□□ 0.82
COL3A1P02461 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC20.19■□□□□ 0.82
COL3A1P02461 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL3A1P02461 AL354989.2-201ENST00000435838 1540 ntBASIC20.19■□□□□ 0.82
COL3A1P02461 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC20.19■□□□□ 0.82
COL3A1P02461 AC011840.2-201ENST00000563063 1520 ntBASIC20.19■□□□□ 0.82
COL3A1P02461 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL3A1P02461 MPV17-205ENST00000402310 906 ntTSL 5 BASIC20.18■□□□□ 0.82
COL3A1P02461 YBX1P6-201ENST00000442962 1002 ntBASIC20.18■□□□□ 0.82
COL3A1P02461 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC20.18■□□□□ 0.82
COL3A1P02461 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL3A1P02461 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC20.18■□□□□ 0.82
COL3A1P02461 OR10B1P-201ENST00000601666 907 ntBASIC20.18■□□□□ 0.82
COL3A1P02461 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL3A1P02461 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
COL3A1P02461 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL3A1P02461 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC20.18■□□□□ 0.82
COL3A1P02461 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC20.18■□□□□ 0.82
COL3A1P02461 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL3A1P02461 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL3A1P02461 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC20.18■□□□□ 0.82
COL3A1P02461 AC104640.1-201ENST00000562617 2109 ntBASIC20.18■□□□□ 0.82
COL3A1P02461 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL3A1P02461 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL3A1P02461 ACE3P-201ENST00000423435 1973 ntBASIC20.18■□□□□ 0.82
COL3A1P02461 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL3A1P02461 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
COL3A1P02461 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL3A1P02461 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
COL3A1P02461 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL3A1P02461 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL3A1P02461 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL3A1P02461 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL3A1P02461 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC20.18■□□□□ 0.82
COL3A1P02461 FAM21FP-201ENST00000426241 1131 ntBASIC20.18■□□□□ 0.82
COL3A1P02461 RPL13AP20-201ENST00000459725 609 ntBASIC20.18■□□□□ 0.82
COL3A1P02461 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
COL3A1P02461 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC20.18■□□□□ 0.82
COL3A1P02461 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
COL3A1P02461 AC005695.3-201ENST00000614522 232 ntBASIC20.18■□□□□ 0.82
COL3A1P02461 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL3A1P02461 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC20.17■□□□□ 0.82
COL3A1P02461 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC20.17■□□□□ 0.82
COL3A1P02461 AC009093.2-202ENST00000620513 2079 ntBASIC20.17■□□□□ 0.82
COL3A1P02461 AL138725.1-201ENST00000407347 1314 ntBASIC20.17■□□□□ 0.82
COL3A1P02461 AHCYP2-201ENST00000430630 1300 ntBASIC20.17■□□□□ 0.82
COL3A1P02461 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
COL3A1P02461 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL3A1P02461 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC20.17■□□□□ 0.82
COL3A1P02461 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL3A1P02461 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL3A1P02461 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL3A1P02461 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC20.17■□□□□ 0.82
COL3A1P02461 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL3A1P02461 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL3A1P02461 FAM86MP-201ENST00000340703 885 ntBASIC20.17■□□□□ 0.82
COL3A1P02461 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC20.17■□□□□ 0.82
COL3A1P02461 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL3A1P02461 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
COL3A1P02461 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL3A1P02461 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC20.17■□□□□ 0.82
COL3A1P02461 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL3A1P02461 USB1-203ENST00000539737 1212 ntTSL 2 BASIC20.17■□□□□ 0.82
COL3A1P02461 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC20.17■□□□□ 0.82
COL3A1P02461 DERL2-202ENST00000570848 657 ntTSL 5 BASIC20.17■□□□□ 0.82
COL3A1P02461 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC20.17■□□□□ 0.82
COL3A1P02461 MIR4783-201ENST00000580343 82 ntBASIC20.17■□□□□ 0.82
COL3A1P02461 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC20.17■□□□□ 0.82
COL3A1P02461 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC20.17■□□□□ 0.82
COL3A1P02461 FES-204ENST00000414248 2327 ntTSL 2 BASIC20.17■□□□□ 0.82
COL3A1P02461 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL3A1P02461 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
COL3A1P02461 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC20.16■□□□□ 0.82
COL3A1P02461 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC20.16■□□□□ 0.82
COL3A1P02461 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
COL3A1P02461 AL023775.1-201ENST00000454907 1746 ntBASIC20.16■□□□□ 0.82
COL3A1P02461 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
COL3A1P02461 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC20.16■□□□□ 0.82
COL3A1P02461 AP000593.2-201ENST00000542775 1433 ntBASIC20.16■□□□□ 0.82
COL3A1P02461 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC20.16■□□□□ 0.82
COL3A1P02461 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC20.16■□□□□ 0.82
COL3A1P02461 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL3A1P02461 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL3A1P02461 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL3A1P02461 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
COL3A1P02461 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
COL3A1P02461 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL3A1P02461 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC20.16■□□□□ 0.82
COL3A1P02461 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC20.16■□□□□ 0.82
COL3A1P02461 LINC00528-201ENST00000600723 2160 ntBASIC20.16■□□□□ 0.82
COL3A1P02461 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL3A1P02461 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL3A1P02461 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC20.15■□□□□ 0.82
COL3A1P02461 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL3A1P02461 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
COL3A1P02461 PARN-202ENST00000420015 2360 ntTSL 2 BASIC20.15■□□□□ 0.82
COL3A1P02461 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL3A1P02461 ZBED1P1-201ENST00000502364 1930 ntBASIC20.15■□□□□ 0.82
COL3A1P02461 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms