Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CACNA1FO60840 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
CACNA1FO60840 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
CACNA1FO60840 AP000593.2-201ENST00000542775 1433 ntBASIC19.23■□□□□ 0.67
CACNA1FO60840 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CACNA1FO60840 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC19.23■□□□□ 0.67
CACNA1FO60840 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CACNA1FO60840 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CACNA1FO60840 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CACNA1FO60840 AC091951.1-201ENST00000512854 2465 ntBASIC19.23■□□□□ 0.67
CACNA1FO60840 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC19.23■□□□□ 0.67
CACNA1FO60840 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CACNA1FO60840 AC007969.1-201ENST00000433675 447 ntBASIC19.23■□□□□ 0.67
CACNA1FO60840 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CACNA1FO60840 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC19.23■□□□□ 0.67
CACNA1FO60840 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC19.23■□□□□ 0.67
CACNA1FO60840 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC19.23■□□□□ 0.67
CACNA1FO60840 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC19.23■□□□□ 0.67
CACNA1FO60840 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC19.23■□□□□ 0.67
CACNA1FO60840 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
CACNA1FO60840 ETV2-208ENST00000621247 941 ntTSL 5 BASIC19.23■□□□□ 0.67
CACNA1FO60840 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CACNA1FO60840 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC19.23■□□□□ 0.67
CACNA1FO60840 AC003102.2-201ENST00000589195 1469 ntBASIC19.23■□□□□ 0.67
CACNA1FO60840 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CACNA1FO60840 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
CACNA1FO60840 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CACNA1FO60840 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CACNA1FO60840 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
CACNA1FO60840 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CACNA1FO60840 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CACNA1FO60840 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CACNA1FO60840 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC19.23■□□□□ 0.67
CACNA1FO60840 RBM38-204ENST00000371219 760 ntTSL 2 BASIC19.23■□□□□ 0.67
CACNA1FO60840 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
CACNA1FO60840 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC19.23■□□□□ 0.67
CACNA1FO60840 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CACNA1FO60840 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
CACNA1FO60840 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC19.23■□□□□ 0.67
CACNA1FO60840 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CACNA1FO60840 AC133552.6-201ENST00000613406 534 ntBASIC19.23■□□□□ 0.67
CACNA1FO60840 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CACNA1FO60840 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC19.22■□□□□ 0.67
CACNA1FO60840 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CACNA1FO60840 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CACNA1FO60840 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC19.22■□□□□ 0.67
CACNA1FO60840 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC19.22■□□□□ 0.67
CACNA1FO60840 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC19.22■□□□□ 0.67
CACNA1FO60840 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC19.22■□□□□ 0.67
CACNA1FO60840 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CACNA1FO60840 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CACNA1FO60840 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CACNA1FO60840 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC19.22■□□□□ 0.67
CACNA1FO60840 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CACNA1FO60840 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CACNA1FO60840 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC19.22■□□□□ 0.67
CACNA1FO60840 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CACNA1FO60840 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CACNA1FO60840 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC19.22■□□□□ 0.67
CACNA1FO60840 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
CACNA1FO60840 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CACNA1FO60840 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CACNA1FO60840 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CACNA1FO60840 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CACNA1FO60840 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CACNA1FO60840 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC19.22■□□□□ 0.67
CACNA1FO60840 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
CACNA1FO60840 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC19.22■□□□□ 0.67
CACNA1FO60840 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CACNA1FO60840 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CACNA1FO60840 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CACNA1FO60840 TUBB1P2-201ENST00000422712 1306 ntBASIC19.21■□□□□ 0.67
CACNA1FO60840 TUBB1P1-201ENST00000503144 1300 ntBASIC19.21■□□□□ 0.67
CACNA1FO60840 AL360270.3-201ENST00000609118 1348 ntBASIC19.21■□□□□ 0.67
CACNA1FO60840 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
CACNA1FO60840 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CACNA1FO60840 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC19.21■□□□□ 0.67
CACNA1FO60840 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CACNA1FO60840 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CACNA1FO60840 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
CACNA1FO60840 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CACNA1FO60840 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CACNA1FO60840 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
CACNA1FO60840 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CACNA1FO60840 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC19.21■□□□□ 0.67
CACNA1FO60840 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
CACNA1FO60840 AC022210.1-201ENST00000449856 793 ntBASIC19.21■□□□□ 0.67
CACNA1FO60840 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC19.21■□□□□ 0.67
CACNA1FO60840 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CACNA1FO60840 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC19.21■□□□□ 0.67
CACNA1FO60840 RIT1-205ENST00000539040 919 ntTSL 2 BASIC19.21■□□□□ 0.67
CACNA1FO60840 NAA38-206ENST00000576384 424 ntTSL 2 BASIC19.21■□□□□ 0.67
CACNA1FO60840 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CACNA1FO60840 TECR-220ENST00000600083 1204 ntTSL 2 BASIC19.21■□□□□ 0.67
CACNA1FO60840 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC19.21■□□□□ 0.67
CACNA1FO60840 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC19.21■□□□□ 0.67
CACNA1FO60840 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CACNA1FO60840 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC19.21■□□□□ 0.67
CACNA1FO60840 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CACNA1FO60840 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 66 ms