Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
TRIM35Q9UPQ4 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC20.11■□□□□ 0.81
TRIM35Q9UPQ4 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM35Q9UPQ4 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM35Q9UPQ4 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM35Q9UPQ4 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC20.11■□□□□ 0.81
TRIM35Q9UPQ4 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM35Q9UPQ4 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
TRIM35Q9UPQ4 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM35Q9UPQ4 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC20.11■□□□□ 0.81
TRIM35Q9UPQ4 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM35Q9UPQ4 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
TRIM35Q9UPQ4 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM35Q9UPQ4 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 AL157414.3-201ENST00000624276 1954 ntBASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 TP73-213ENST00000604479 1623 ntTSL 5 BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 MROH4P-201ENST00000431302 1578 ntBASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 BAATP1-201ENST00000412284 1225 ntBASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 KSR1-207ENST00000578981 748 ntTSL 4 BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 GNRHR2-203ENST00000581100 1187 ntBASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 ZBTB45P1-201ENST00000452761 1456 ntBASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM35Q9UPQ4 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 AC106760.1-201ENST00000508690 800 ntBASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 AC068587.3-201ENST00000526613 355 ntBASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 APOC4-201ENST00000591600 348 ntTSL 3 BASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 AC015936.2-201ENST00000593177 259 ntBASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 BTNL10-201ENST00000595971 695 ntBASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 AC239800.4-201ENST00000603712 296 ntBASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 AP005019.2-201ENST00000615104 511 ntBASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
TRIM35Q9UPQ4 AC104640.1-201ENST00000562617 2109 ntBASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms