Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
SHROOM3Q8TF72 HADH-212ENST00000638621 741 ntTSL 5 BASIC15.84■□□□□ 0.13
SHROOM3Q8TF72 AP002414.2-201ENST00000591780 3365 ntBASIC15.84■□□□□ 0.13
SHROOM3Q8TF72 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC15.84■□□□□ 0.13
SHROOM3Q8TF72 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC15.83■□□□□ 0.13
SHROOM3Q8TF72 AP000845.1-201ENST00000581677 2131 ntBASIC15.83■□□□□ 0.13
SHROOM3Q8TF72 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
SHROOM3Q8TF72 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
SHROOM3Q8TF72 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC15.83■□□□□ 0.13
SHROOM3Q8TF72 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.13
SHROOM3Q8TF72 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
SHROOM3Q8TF72 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC15.83■□□□□ 0.13
SHROOM3Q8TF72 DRD5P1-201ENST00000456605 1438 ntBASIC15.83■□□□□ 0.13
SHROOM3Q8TF72 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SHROOM3Q8TF72 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC15.83■□□□□ 0.12
SHROOM3Q8TF72 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.83■□□□□ 0.12
SHROOM3Q8TF72 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC15.83■□□□□ 0.12
SHROOM3Q8TF72 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
SHROOM3Q8TF72 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SHROOM3Q8TF72 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC15.83■□□□□ 0.12
SHROOM3Q8TF72 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
SHROOM3Q8TF72 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SHROOM3Q8TF72 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC15.83■□□□□ 0.12
SHROOM3Q8TF72 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC15.83■□□□□ 0.12
SHROOM3Q8TF72 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC15.83■□□□□ 0.12
SHROOM3Q8TF72 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC15.83■□□□□ 0.12
SHROOM3Q8TF72 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SHROOM3Q8TF72 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SHROOM3Q8TF72 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
SHROOM3Q8TF72 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC15.83■□□□□ 0.12
SHROOM3Q8TF72 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SHROOM3Q8TF72 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
SHROOM3Q8TF72 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SHROOM3Q8TF72 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
SHROOM3Q8TF72 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
SHROOM3Q8TF72 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
SHROOM3Q8TF72 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC15.83■□□□□ 0.12
SHROOM3Q8TF72 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SHROOM3Q8TF72 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC15.83■□□□□ 0.12
SHROOM3Q8TF72 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 REXO1L2P-201ENST00000425429 2069 ntBASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 RN7SL399P-201ENST00000471648 279 ntBASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 AC092658.1-201ENST00000505836 891 ntBASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 SAMD11P1-201ENST00000571429 661 ntBASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 DGCR5-201ENST00000399539 862 ntBASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 OR6D1P-203ENST00000641209 4860 ntBASIC15.82■□□□□ 0.12
SHROOM3Q8TF72 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SHROOM3Q8TF72 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC15.81■□□□□ 0.12
SHROOM3Q8TF72 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SHROOM3Q8TF72 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC15.81■□□□□ 0.12
SHROOM3Q8TF72 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHROOM3Q8TF72 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms