Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
PRKDCP78527 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC10.88□□□□□ -0.67
PRKDCP78527 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
PRKDCP78527 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
PRKDCP78527 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC10.88□□□□□ -0.67
PRKDCP78527 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC10.88□□□□□ -0.67
PRKDCP78527 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
PRKDCP78527 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
PRKDCP78527 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC10.88□□□□□ -0.67
PRKDCP78527 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
PRKDCP78527 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC10.88□□□□□ -0.67
PRKDCP78527 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC10.88□□□□□ -0.67
PRKDCP78527 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC10.88□□□□□ -0.67
PRKDCP78527 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC10.88□□□□□ -0.67
PRKDCP78527 AC002127.2-201ENST00000444032 792 ntTSL 3 BASIC10.88□□□□□ -0.67
PRKDCP78527 HIST1H2APS2-201ENST00000454426 370 ntBASIC10.88□□□□□ -0.67
PRKDCP78527 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC10.88□□□□□ -0.67
PRKDCP78527 AC006116.2-201ENST00000589958 988 ntBASIC10.88□□□□□ -0.67
PRKDCP78527 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC10.88□□□□□ -0.67
PRKDCP78527 AC020904.3-201ENST00000624199 442 ntBASIC10.88□□□□□ -0.67
PRKDCP78527 AC002472.3-201ENST00000640124 621 ntBASIC10.88□□□□□ -0.67
PRKDCP78527 FRMPD2B-201ENST00000431305 1347 ntBASIC10.88□□□□□ -0.67
PRKDCP78527 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC10.88□□□□□ -0.67
PRKDCP78527 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC10.88□□□□□ -0.67
PRKDCP78527 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC10.88□□□□□ -0.67
PRKDCP78527 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
PRKDCP78527 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
PRKDCP78527 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
PRKDCP78527 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC10.88□□□□□ -0.67
PRKDCP78527 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
PRKDCP78527 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC10.88□□□□□ -0.67
PRKDCP78527 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
PRKDCP78527 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
PRKDCP78527 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC10.88□□□□□ -0.67
PRKDCP78527 TRAPPC2L-212ENST00000567312 499 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
PRKDCP78527 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC10.88□□□□□ -0.67
PRKDCP78527 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
PRKDCP78527 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC10.88□□□□□ -0.67
PRKDCP78527 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC10.87□□□□□ -0.67
PRKDCP78527 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
PRKDCP78527 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC10.87□□□□□ -0.67
PRKDCP78527 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
PRKDCP78527 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC10.87□□□□□ -0.67
PRKDCP78527 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC10.87□□□□□ -0.67
PRKDCP78527 LINC00824-204ENST00000520766 597 ntTSL 5 BASIC10.87□□□□□ -0.67
PRKDCP78527 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
PRKDCP78527 CYP4F36P-201ENST00000589193 186 ntBASIC10.87□□□□□ -0.67
PRKDCP78527 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
PRKDCP78527 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
PRKDCP78527 AC011676.5-201ENST00000624864 2660 ntBASIC10.87□□□□□ -0.67
PRKDCP78527 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC10.87□□□□□ -0.67
PRKDCP78527 AC105020.1-201ENST00000435356 2205 ntBASIC10.87□□□□□ -0.67
PRKDCP78527 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
PRKDCP78527 AC006449.5-201ENST00000610658 2098 ntBASIC10.87□□□□□ -0.67
PRKDCP78527 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC10.87□□□□□ -0.67
PRKDCP78527 AC108734.2-201ENST00000420887 1069 ntBASIC10.87□□□□□ -0.67
PRKDCP78527 AC012441.2-201ENST00000444843 739 ntBASIC10.87□□□□□ -0.67
PRKDCP78527 C5orf63-203ENST00000509733 553 ntTSL 4 BASIC10.87□□□□□ -0.67
PRKDCP78527 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC10.87□□□□□ -0.67
PRKDCP78527 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC10.87□□□□□ -0.67
PRKDCP78527 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
PRKDCP78527 AC007613.1-201ENST00000572811 2597 ntBASIC10.87□□□□□ -0.67
PRKDCP78527 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC10.87□□□□□ -0.67
PRKDCP78527 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC10.87□□□□□ -0.67
PRKDCP78527 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
PRKDCP78527 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC10.87□□□□□ -0.67
PRKDCP78527 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
PRKDCP78527 AC007292.2-201ENST00000593524 1812 ntBASIC10.87□□□□□ -0.67
PRKDCP78527 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
PRKDCP78527 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC10.87□□□□□ -0.67
PRKDCP78527 RN7SL173P-201ENST00000461853 292 ntBASIC10.87□□□□□ -0.67
PRKDCP78527 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC10.87□□□□□ -0.67
PRKDCP78527 KHDRBS3-206ENST00000520981 1243 ntTSL 5 BASIC10.87□□□□□ -0.67
PRKDCP78527 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC10.87□□□□□ -0.67
PRKDCP78527 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
PRKDCP78527 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC10.87□□□□□ -0.67
PRKDCP78527 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
PRKDCP78527 AL359258.3-201ENST00000622910 2331 ntBASIC10.87□□□□□ -0.67
PRKDCP78527 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
PRKDCP78527 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
PRKDCP78527 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC10.87□□□□□ -0.67
PRKDCP78527 RAN-210ENST00000541630 1475 ntTSL 2 BASIC10.87□□□□□ -0.67
PRKDCP78527 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
PRKDCP78527 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
PRKDCP78527 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
PRKDCP78527 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
PRKDCP78527 MRPS28-201ENST00000276585 850 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
PRKDCP78527 LINC01983-201ENST00000413586 574 ntTSL 2 BASIC10.86□□□□□ -0.67
PRKDCP78527 AL929302.1-201ENST00000426556 871 ntBASIC10.86□□□□□ -0.67
PRKDCP78527 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC10.86□□□□□ -0.67
PRKDCP78527 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
PRKDCP78527 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC10.86□□□□□ -0.67
PRKDCP78527 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC10.86□□□□□ -0.67
PRKDCP78527 AP001043.1-206ENST00000613045 730 ntTSL 5 BASIC10.86□□□□□ -0.67
PRKDCP78527 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC10.86□□□□□ -0.67
PRKDCP78527 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC10.86□□□□□ -0.67
PRKDCP78527 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC10.86□□□□□ -0.67
PRKDCP78527 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
PRKDCP78527 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
PRKDCP78527 SLC9A7P1-202ENST00000556476 2239 ntBASIC10.86□□□□□ -0.67
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms