Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC12.69□□□□□ -0.38
LMO4P61968 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC12.69□□□□□ -0.38
LMO4P61968 HNRNPA1P48-202ENST00000565308 961 ntBASIC12.69□□□□□ -0.38
LMO4P61968 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC12.69□□□□□ -0.38
LMO4P61968 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC12.69□□□□□ -0.38
LMO4P61968 ECM1P1-201ENST00000604092 1279 ntBASIC12.69□□□□□ -0.38
LMO4P61968 MIR6787-201ENST00000616675 61 ntBASIC12.69□□□□□ -0.38
LMO4P61968 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC12.69□□□□□ -0.38
LMO4P61968 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
LMO4P61968 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
LMO4P61968 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC12.69□□□□□ -0.38
LMO4P61968 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
LMO4P61968 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
LMO4P61968 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC12.69□□□□□ -0.38
LMO4P61968 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LMO4P61968 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
LMO4P61968 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LMO4P61968 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LMO4P61968 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LMO4P61968 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC12.69□□□□□ -0.38
LMO4P61968 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LMO4P61968 AL391005.1-201ENST00000623953 2435 ntBASIC12.69□□□□□ -0.38
LMO4P61968 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LMO4P61968 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LMO4P61968 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
LMO4P61968 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
LMO4P61968 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LMO4P61968 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
LMO4P61968 AP005117.1-202ENST00000581724 1908 ntBASIC12.68□□□□□ -0.38
LMO4P61968 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LMO4P61968 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LMO4P61968 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
LMO4P61968 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LMO4P61968 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LMO4P61968 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LMO4P61968 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
LMO4P61968 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC12.68□□□□□ -0.38
LMO4P61968 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LMO4P61968 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC12.68□□□□□ -0.38
LMO4P61968 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LMO4P61968 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC12.68□□□□□ -0.38
LMO4P61968 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LMO4P61968 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LMO4P61968 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
LMO4P61968 MIR326-201ENST00000362220 95 ntBASIC12.68□□□□□ -0.38
LMO4P61968 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LMO4P61968 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
LMO4P61968 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
LMO4P61968 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
LMO4P61968 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC12.68□□□□□ -0.38
LMO4P61968 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC12.68□□□□□ -0.38
LMO4P61968 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
LMO4P61968 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC12.68□□□□□ -0.38
LMO4P61968 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC12.68□□□□□ -0.38
LMO4P61968 GOLGA2P4-201ENST00000441462 777 ntBASIC12.68□□□□□ -0.38
LMO4P61968 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
LMO4P61968 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC12.68□□□□□ -0.38
LMO4P61968 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC12.68□□□□□ -0.38
LMO4P61968 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC12.68□□□□□ -0.38
LMO4P61968 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC12.68□□□□□ -0.38
LMO4P61968 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC12.68□□□□□ -0.38
LMO4P61968 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC12.68□□□□□ -0.38
LMO4P61968 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC12.68□□□□□ -0.38
LMO4P61968 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC12.68□□□□□ -0.38
LMO4P61968 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC12.68□□□□□ -0.38
LMO4P61968 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC12.68□□□□□ -0.38
LMO4P61968 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
LMO4P61968 AC091271.1-201ENST00000611877 1162 ntBASIC12.68□□□□□ -0.38
LMO4P61968 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
LMO4P61968 ENPP7P14-201ENST00000621765 1040 ntBASIC12.68□□□□□ -0.38
LMO4P61968 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC12.68□□□□□ -0.38
LMO4P61968 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LMO4P61968 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC12.68□□□□□ -0.38
LMO4P61968 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
LMO4P61968 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LMO4P61968 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC12.68□□□□□ -0.38
LMO4P61968 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LMO4P61968 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
LMO4P61968 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
LMO4P61968 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC12.68□□□□□ -0.38
LMO4P61968 AC009090.5-201ENST00000624886 2285 ntBASIC12.68□□□□□ -0.38
LMO4P61968 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LMO4P61968 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LMO4P61968 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC12.68□□□□□ -0.38
LMO4P61968 PRAL-201ENST00000624952 3286 ntBASIC12.68□□□□□ -0.38
LMO4P61968 KRT8P44-201ENST00000441609 1350 ntBASIC12.68□□□□□ -0.38
LMO4P61968 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC12.68□□□□□ -0.38
LMO4P61968 AC020907.1-201ENST00000616460 1350 ntBASIC12.68□□□□□ -0.38
LMO4P61968 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LMO4P61968 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LMO4P61968 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
LMO4P61968 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC12.67□□□□□ -0.38
LMO4P61968 TNRC18P3-201ENST00000441896 2691 ntBASIC12.67□□□□□ -0.38
LMO4P61968 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC12.67□□□□□ -0.38
LMO4P61968 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LMO4P61968 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC12.67□□□□□ -0.38
LMO4P61968 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
LMO4P61968 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LMO4P61968 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LMO4P61968 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms