Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC21.21■□□□□ 0.99
MSH6P52701 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MSH6P52701 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH6P52701 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH6P52701 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.99
MSH6P52701 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
MSH6P52701 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
MSH6P52701 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MSH6P52701 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MSH6P52701 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
MSH6P52701 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
MSH6P52701 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MSH6P52701 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
MSH6P52701 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
MSH6P52701 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
MSH6P52701 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC21.2■□□□□ 0.98
MSH6P52701 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
MSH6P52701 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
MSH6P52701 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
MSH6P52701 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC21.2■□□□□ 0.98
MSH6P52701 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MSH6P52701 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC21.2■□□□□ 0.98
MSH6P52701 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
MSH6P52701 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
MSH6P52701 HPGD-203ENST00000422112 805 ntTSL 2 BASIC21.2■□□□□ 0.98
MSH6P52701 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC21.2■□□□□ 0.98
MSH6P52701 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC21.2■□□□□ 0.98
MSH6P52701 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC21.2■□□□□ 0.98
MSH6P52701 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC21.2■□□□□ 0.98
MSH6P52701 EHF-205ENST00000527935 557 ntTSL 2 BASIC21.2■□□□□ 0.98
MSH6P52701 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC21.2■□□□□ 0.98
MSH6P52701 RBM8B-201ENST00000555532 525 ntBASIC21.2■□□□□ 0.98
MSH6P52701 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC21.2■□□□□ 0.98
MSH6P52701 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC21.2■□□□□ 0.98
MSH6P52701 NAT9-211ENST00000580632 799 ntTSL 3 BASIC21.2■□□□□ 0.98
MSH6P52701 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MSH6P52701 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC21.2■□□□□ 0.98
MSH6P52701 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
MSH6P52701 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MSH6P52701 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
MSH6P52701 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSH6P52701 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC21.19■□□□□ 0.98
MSH6P52701 PRORSD1P-202ENST00000563365 2154 ntBASIC21.19■□□□□ 0.98
MSH6P52701 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC21.19■□□□□ 0.98
MSH6P52701 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC21.19■□□□□ 0.98
MSH6P52701 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC21.19■□□□□ 0.98
MSH6P52701 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSH6P52701 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC21.19■□□□□ 0.98
MSH6P52701 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC21.19■□□□□ 0.98
MSH6P52701 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
MSH6P52701 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC21.19■□□□□ 0.98
MSH6P52701 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSH6P52701 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSH6P52701 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
MSH6P52701 PFN2-205ENST00000461868 613 ntTSL 2 BASIC21.19■□□□□ 0.98
MSH6P52701 AC010234.1-201ENST00000494599 870 ntBASIC21.19■□□□□ 0.98
MSH6P52701 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC21.19■□□□□ 0.98
MSH6P52701 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC21.19■□□□□ 0.98
MSH6P52701 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC21.19■□□□□ 0.98
MSH6P52701 AL358472.3-201ENST00000608147 415 ntBASIC21.19■□□□□ 0.98
MSH6P52701 AL136301.1-201ENST00000615830 422 ntBASIC21.19■□□□□ 0.98
MSH6P52701 AC127024.7-201ENST00000625101 200 ntBASIC21.19■□□□□ 0.98
MSH6P52701 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC21.19■□□□□ 0.98
MSH6P52701 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSH6P52701 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
MSH6P52701 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSH6P52701 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSH6P52701 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSH6P52701 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
MSH6P52701 FLII-221ENST00000578558 2377 ntTSL 5 BASIC21.19■□□□□ 0.98
MSH6P52701 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH6P52701 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH6P52701 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC21.18■□□□□ 0.98
MSH6P52701 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
MSH6P52701 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH6P52701 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
MSH6P52701 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC21.18■□□□□ 0.98
MSH6P52701 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
MSH6P52701 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH6P52701 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
MSH6P52701 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH6P52701 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH6P52701 AC005052.1-201ENST00000625181 2492 ntBASIC21.18■□□□□ 0.98
MSH6P52701 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC21.18■□□□□ 0.98
MSH6P52701 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH6P52701 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC21.18■□□□□ 0.98
MSH6P52701 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH6P52701 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
MSH6P52701 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
MSH6P52701 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
MSH6P52701 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
MSH6P52701 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
MSH6P52701 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC21.18■□□□□ 0.98
MSH6P52701 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC21.18■□□□□ 0.98
MSH6P52701 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
MSH6P52701 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC21.18■□□□□ 0.98
MSH6P52701 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
MSH6P52701 BUD31-205ENST00000456893 512 ntTSL 5 BASIC21.18■□□□□ 0.98
MSH6P52701 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC21.18■□□□□ 0.98
MSH6P52701 STUB1-204ENST00000564370 875 ntTSL 2 BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms