Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 DKFZP434H168-201ENST00000567381 1905 ntBASIC13.05□□□□□ -0.32
HOXA1P49639 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
HOXA1P49639 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
HOXA1P49639 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HOXA1P49639 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HOXA1P49639 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HOXA1P49639 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
HOXA1P49639 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HOXA1P49639 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
HOXA1P49639 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC13.05□□□□□ -0.32
HOXA1P49639 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
HOXA1P49639 AMT-221ENST00000538581 2038 ntTSL 2 BASIC13.05□□□□□ -0.32
HOXA1P49639 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HOXA1P49639 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HOXA1P49639 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC13.05□□□□□ -0.32
HOXA1P49639 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC13.05□□□□□ -0.32
HOXA1P49639 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
HOXA1P49639 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
HOXA1P49639 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC13.04□□□□□ -0.32
HOXA1P49639 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC13.04□□□□□ -0.32
HOXA1P49639 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC13.04□□□□□ -0.32
HOXA1P49639 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC13.04□□□□□ -0.32
HOXA1P49639 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HOXA1P49639 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC13.04□□□□□ -0.32
HOXA1P49639 CICP11-201ENST00000434745 2827 ntBASIC13.04□□□□□ -0.32
HOXA1P49639 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HOXA1P49639 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC13.04□□□□□ -0.32
HOXA1P49639 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
HOXA1P49639 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HOXA1P49639 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC13.04□□□□□ -0.32
HOXA1P49639 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HOXA1P49639 HSPA7-201ENST00000445535 1927 ntBASIC13.04□□□□□ -0.32
HOXA1P49639 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC13.04□□□□□ -0.32
HOXA1P49639 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
HOXA1P49639 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
HOXA1P49639 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
HOXA1P49639 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HOXA1P49639 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HOXA1P49639 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HOXA1P49639 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC13.04□□□□□ -0.32
HOXA1P49639 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
HOXA1P49639 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HOXA1P49639 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HOXA1P49639 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
HOXA1P49639 VMO1-203ENST00000416307 712 ntTSL 2 BASIC13.04□□□□□ -0.32
HOXA1P49639 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
HOXA1P49639 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC13.04□□□□□ -0.32
HOXA1P49639 MOK-208ENST00000519058 917 ntTSL 2 BASIC13.04□□□□□ -0.32
HOXA1P49639 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC13.04□□□□□ -0.32
HOXA1P49639 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC13.04□□□□□ -0.32
HOXA1P49639 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
HOXA1P49639 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HOXA1P49639 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HOXA1P49639 IFNL4P1-201ENST00000607083 540 ntBASIC13.04□□□□□ -0.32
HOXA1P49639 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HOXA1P49639 TGM1-201ENST00000206765 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HOXA1P49639 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
HOXA1P49639 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC13.04□□□□□ -0.32
HOXA1P49639 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
HOXA1P49639 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HOXA1P49639 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HOXA1P49639 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HOXA1P49639 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
HOXA1P49639 ATP2C2-AS1-201ENST00000565700 2998 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HOXA1P49639 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
HOXA1P49639 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC13.04□□□□□ -0.32
HOXA1P49639 AC011700.1-201ENST00000610409 2627 ntBASIC13.04□□□□□ -0.32
HOXA1P49639 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HOXA1P49639 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HOXA1P49639 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HOXA1P49639 NSD2-203ENST00000382888 2666 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HOXA1P49639 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HOXA1P49639 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
HOXA1P49639 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
HOXA1P49639 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
HOXA1P49639 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
HOXA1P49639 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
HOXA1P49639 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
HOXA1P49639 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
HOXA1P49639 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC13.03□□□□□ -0.32
HOXA1P49639 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC13.03□□□□□ -0.32
HOXA1P49639 HNF1A-201ENST00000257555 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HOXA1P49639 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC13.03□□□□□ -0.32
HOXA1P49639 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HOXA1P49639 SLC22A2-202ENST00000366953 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HOXA1P49639 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
HOXA1P49639 AC016027.1-202ENST00000607927 1699 ntBASIC13.03□□□□□ -0.32
HOXA1P49639 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
HOXA1P49639 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
HOXA1P49639 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
HOXA1P49639 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
HOXA1P49639 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HOXA1P49639 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
HOXA1P49639 PMS2P4-201ENST00000412466 1052 ntBASIC13.03□□□□□ -0.32
HOXA1P49639 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC13.03□□□□□ -0.32
HOXA1P49639 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC13.03□□□□□ -0.32
HOXA1P49639 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
HOXA1P49639 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC13.03□□□□□ -0.32
HOXA1P49639 AL513480.1-201ENST00000451731 511 ntBASIC13.03□□□□□ -0.32
HOXA1P49639 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC13.03□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms