Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SOX2P48431 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX2P48431 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX2P48431 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX2P48431 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC13.8□□□□□ -0.2
SOX2P48431 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX2P48431 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
SOX2P48431 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
SOX2P48431 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX2P48431 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX2P48431 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SOX2P48431 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC13.8□□□□□ -0.2
SOX2P48431 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SOX2P48431 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX2P48431 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX2P48431 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC13.8□□□□□ -0.2
SOX2P48431 KRT18P2-201ENST00000447938 1258 ntBASIC13.8□□□□□ -0.2
SOX2P48431 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX2P48431 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC13.8□□□□□ -0.2
SOX2P48431 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX2P48431 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SOX2P48431 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC13.8□□□□□ -0.2
SOX2P48431 AC104692.2-201ENST00000603054 253 ntBASIC13.8□□□□□ -0.2
SOX2P48431 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC13.8□□□□□ -0.2
SOX2P48431 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SOX2P48431 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX2P48431 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX2P48431 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX2P48431 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC13.8□□□□□ -0.2
SOX2P48431 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX2P48431 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX2P48431 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX2P48431 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC13.8□□□□□ -0.2
SOX2P48431 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX2P48431 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SOX2P48431 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
SOX2P48431 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX2P48431 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX2P48431 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX2P48431 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC13.8□□□□□ -0.2
SOX2P48431 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX2P48431 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SOX2P48431 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC13.8□□□□□ -0.2
SOX2P48431 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX2P48431 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SOX2P48431 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC13.8□□□□□ -0.2
SOX2P48431 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX2P48431 AJ011931.1-201ENST00000618749 2492 ntBASIC13.8□□□□□ -0.2
SOX2P48431 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX2P48431 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC13.8□□□□□ -0.2
SOX2P48431 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
SOX2P48431 AL390755.1-201ENST00000623716 2027 ntBASIC13.8□□□□□ -0.2
SOX2P48431 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC13.8□□□□□ -0.2
SOX2P48431 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC13.8□□□□□ -0.2
SOX2P48431 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX2P48431 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SOX2P48431 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX2P48431 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
SOX2P48431 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC13.79□□□□□ -0.2
SOX2P48431 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
SOX2P48431 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX2P48431 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX2P48431 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX2P48431 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX2P48431 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX2P48431 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SOX2P48431 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
SOX2P48431 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SOX2P48431 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SOX2P48431 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX2P48431 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC13.79□□□□□ -0.2
SOX2P48431 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
SOX2P48431 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX2P48431 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
SOX2P48431 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX2P48431 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX2P48431 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SOX2P48431 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX2P48431 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC13.79□□□□□ -0.2
SOX2P48431 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC13.79□□□□□ -0.2
SOX2P48431 RPS8P6-201ENST00000426177 609 ntBASIC13.79□□□□□ -0.2
SOX2P48431 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC13.79□□□□□ -0.2
SOX2P48431 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC13.79□□□□□ -0.2
SOX2P48431 AC074386.1-202ENST00000463561 864 ntBASIC13.79□□□□□ -0.2
SOX2P48431 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC13.79□□□□□ -0.2
SOX2P48431 RNA5SP419-201ENST00000515908 135 ntBASIC13.79□□□□□ -0.2
SOX2P48431 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC13.79□□□□□ -0.2
SOX2P48431 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC13.79□□□□□ -0.2
SOX2P48431 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC13.79□□□□□ -0.2
SOX2P48431 CD63-204ENST00000546939 779 ntTSL 3 BASIC13.79□□□□□ -0.2
SOX2P48431 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
SOX2P48431 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC13.79□□□□□ -0.2
SOX2P48431 RARRES2P8-201ENST00000566335 367 ntBASIC13.79□□□□□ -0.2
SOX2P48431 AP002472.1-201ENST00000577490 586 ntBASIC13.79□□□□□ -0.2
SOX2P48431 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC13.79□□□□□ -0.2
SOX2P48431 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
SOX2P48431 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC13.79□□□□□ -0.2
SOX2P48431 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX2P48431 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX2P48431 AC104109.2-201ENST00000602919 1418 ntBASIC13.79□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms