Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC069335.1-201ENST00000489972 472 ntBASIC11.96□□□□□ -0.49
HLA-DMBP28068 CCDC74BP1-201ENST00000508880 1123 ntBASIC11.96□□□□□ -0.49
HLA-DMBP28068 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.49
HLA-DMBP28068 NAA38-207ENST00000576861 556 ntTSL 3 BASIC11.96□□□□□ -0.49
HLA-DMBP28068 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC11.96□□□□□ -0.49
HLA-DMBP28068 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
HLA-DMBP28068 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC11.96□□□□□ -0.49
HLA-DMBP28068 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC11.96□□□□□ -0.49
HLA-DMBP28068 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
HLA-DMBP28068 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HLA-DMBP28068 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC11.96□□□□□ -0.5
HLA-DMBP28068 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.5
HLA-DMBP28068 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.5
HLA-DMBP28068 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.5
HLA-DMBP28068 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC11.96□□□□□ -0.5
HLA-DMBP28068 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.5
HLA-DMBP28068 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC11.96□□□□□ -0.5
HLA-DMBP28068 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
HLA-DMBP28068 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
HLA-DMBP28068 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC11.96□□□□□ -0.5
HLA-DMBP28068 AGAP7P-201ENST00000582299 2062 ntBASIC11.96□□□□□ -0.5
HLA-DMBP28068 AGAP14-201ENST00000624701 2060 ntBASIC11.96□□□□□ -0.5
HLA-DMBP28068 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
HLA-DMBP28068 AC023024.2-201ENST00000623561 1993 ntBASIC11.96□□□□□ -0.5
HLA-DMBP28068 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC11.96□□□□□ -0.5
HLA-DMBP28068 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
HLA-DMBP28068 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
HLA-DMBP28068 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HLA-DMBP28068 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
HLA-DMBP28068 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC11.95□□□□□ -0.5
HLA-DMBP28068 AC148477.4-201ENST00000613430 1793 ntBASIC11.95□□□□□ -0.5
HLA-DMBP28068 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HLA-DMBP28068 KRT8P44-201ENST00000441609 1350 ntBASIC11.95□□□□□ -0.5
HLA-DMBP28068 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HLA-DMBP28068 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HLA-DMBP28068 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC11.95□□□□□ -0.5
HLA-DMBP28068 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
HLA-DMBP28068 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HLA-DMBP28068 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HLA-DMBP28068 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
HLA-DMBP28068 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC11.95□□□□□ -0.5
HLA-DMBP28068 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
HLA-DMBP28068 TSEN15P1-201ENST00000423257 515 ntBASIC11.95□□□□□ -0.5
HLA-DMBP28068 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
HLA-DMBP28068 AL592309.1-201ENST00000443127 649 ntBASIC11.95□□□□□ -0.5
HLA-DMBP28068 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
HLA-DMBP28068 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC11.95□□□□□ -0.5
HLA-DMBP28068 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC11.95□□□□□ -0.5
HLA-DMBP28068 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC11.95□□□□□ -0.5
HLA-DMBP28068 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC11.95□□□□□ -0.5
HLA-DMBP28068 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC11.95□□□□□ -0.5
HLA-DMBP28068 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
HLA-DMBP28068 HNRNPUP1-201ENST00000554987 333 ntBASIC11.95□□□□□ -0.5
HLA-DMBP28068 MAX-210ENST00000555419 765 ntTSL 5 BASIC11.95□□□□□ -0.5
HLA-DMBP28068 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC11.95□□□□□ -0.5
HLA-DMBP28068 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC11.95□□□□□ -0.5
HLA-DMBP28068 AC022145.2-201ENST00000598203 171 ntBASIC11.95□□□□□ -0.5
HLA-DMBP28068 AC027612.4-201ENST00000605371 583 ntBASIC11.95□□□□□ -0.5
HLA-DMBP28068 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC11.95□□□□□ -0.5
HLA-DMBP28068 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC11.95□□□□□ -0.5
HLA-DMBP28068 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC11.95□□□□□ -0.5
HLA-DMBP28068 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HLA-DMBP28068 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
HLA-DMBP28068 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC11.95□□□□□ -0.5
HLA-DMBP28068 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC11.95□□□□□ -0.5
HLA-DMBP28068 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HLA-DMBP28068 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC11.95□□□□□ -0.5
HLA-DMBP28068 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC11.95□□□□□ -0.5
HLA-DMBP28068 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC11.95□□□□□ -0.5
HLA-DMBP28068 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HLA-DMBP28068 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
HLA-DMBP28068 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
HLA-DMBP28068 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC11.95□□□□□ -0.5
HLA-DMBP28068 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC11.95□□□□□ -0.5
HLA-DMBP28068 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
HLA-DMBP28068 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
HLA-DMBP28068 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HLA-DMBP28068 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
HLA-DMBP28068 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC11.95□□□□□ -0.5
HLA-DMBP28068 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
HLA-DMBP28068 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
HLA-DMBP28068 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HLA-DMBP28068 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC11.94□□□□□ -0.5
HLA-DMBP28068 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC11.94□□□□□ -0.5
HLA-DMBP28068 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC11.94□□□□□ -0.5
HLA-DMBP28068 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
HLA-DMBP28068 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
HLA-DMBP28068 AL607033.1-201ENST00000623900 1599 ntBASIC11.94□□□□□ -0.5
HLA-DMBP28068 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HLA-DMBP28068 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HLA-DMBP28068 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HLA-DMBP28068 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC11.94□□□□□ -0.5
HLA-DMBP28068 AZGP1P1-201ENST00000411909 902 ntBASIC11.94□□□□□ -0.5
HLA-DMBP28068 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC11.94□□□□□ -0.5
HLA-DMBP28068 AC005237.2-201ENST00000434368 219 ntBASIC11.94□□□□□ -0.5
HLA-DMBP28068 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC11.94□□□□□ -0.5
HLA-DMBP28068 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC11.94□□□□□ -0.5
HLA-DMBP28068 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC11.94□□□□□ -0.5
HLA-DMBP28068 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
HLA-DMBP28068 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC11.94□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms