Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL9A1P20849 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC15.9■□□□□ 0.14
COL9A1P20849 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL9A1P20849 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL9A1P20849 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL9A1P20849 ACKR1-201ENST00000368121 1240 ntBASIC15.9■□□□□ 0.14
COL9A1P20849 SMS-201ENST00000379404 1174 ntTSL 3 BASIC15.9■□□□□ 0.14
COL9A1P20849 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC15.9■□□□□ 0.14
COL9A1P20849 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC15.9■□□□□ 0.14
COL9A1P20849 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC15.9■□□□□ 0.14
COL9A1P20849 TTTY14-204ENST00000452584 860 ntTSL 3 BASIC15.9■□□□□ 0.14
COL9A1P20849 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC15.9■□□□□ 0.14
COL9A1P20849 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL9A1P20849 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC15.9■□□□□ 0.14
COL9A1P20849 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC15.9■□□□□ 0.14
COL9A1P20849 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC15.9■□□□□ 0.14
COL9A1P20849 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC15.9■□□□□ 0.14
COL9A1P20849 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL9A1P20849 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC15.9■□□□□ 0.14
COL9A1P20849 AC004686.1-201ENST00000605113 538 ntBASIC15.9■□□□□ 0.14
COL9A1P20849 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC15.9■□□□□ 0.14
COL9A1P20849 AC132938.4-201ENST00000623835 848 ntBASIC15.9■□□□□ 0.14
COL9A1P20849 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL9A1P20849 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
COL9A1P20849 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC15.9■□□□□ 0.14
COL9A1P20849 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC15.9■□□□□ 0.14
COL9A1P20849 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC15.9■□□□□ 0.14
COL9A1P20849 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL9A1P20849 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
COL9A1P20849 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
COL9A1P20849 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL9A1P20849 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL9A1P20849 KRT8P35-201ENST00000483942 1338 ntBASIC15.9■□□□□ 0.14
COL9A1P20849 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL9A1P20849 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL9A1P20849 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC15.9■□□□□ 0.14
COL9A1P20849 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.9■□□□□ 0.14
COL9A1P20849 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL9A1P20849 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL9A1P20849 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
COL9A1P20849 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.14
COL9A1P20849 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.14
COL9A1P20849 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.14
COL9A1P20849 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
COL9A1P20849 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL9A1P20849 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL9A1P20849 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL9A1P20849 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
COL9A1P20849 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
COL9A1P20849 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC15.89■□□□□ 0.13
COL9A1P20849 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL9A1P20849 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC15.89■□□□□ 0.13
COL9A1P20849 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
COL9A1P20849 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL9A1P20849 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
COL9A1P20849 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL9A1P20849 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL9A1P20849 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL9A1P20849 POM121L9P-203ENST00000441984 1285 ntBASIC15.89■□□□□ 0.13
COL9A1P20849 AL590640.2-201ENST00000457038 527 ntBASIC15.89■□□□□ 0.13
COL9A1P20849 IL20RB-AS1-201ENST00000462176 562 ntTSL 4 BASIC15.89■□□□□ 0.13
COL9A1P20849 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC15.89■□□□□ 0.13
COL9A1P20849 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC15.89■□□□□ 0.13
COL9A1P20849 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL9A1P20849 AC130324.1-201ENST00000584157 831 ntTSL 3 BASIC15.89■□□□□ 0.13
COL9A1P20849 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC15.89■□□□□ 0.13
COL9A1P20849 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
COL9A1P20849 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC15.89■□□□□ 0.13
COL9A1P20849 AC244250.3-201ENST00000620749 366 ntBASIC15.89■□□□□ 0.13
COL9A1P20849 AL645728.2-202ENST00000641679 227 ntBASIC15.89■□□□□ 0.13
COL9A1P20849 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC15.89■□□□□ 0.13
COL9A1P20849 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL9A1P20849 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL9A1P20849 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.89■□□□□ 0.13
COL9A1P20849 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
COL9A1P20849 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC15.89■□□□□ 0.13
COL9A1P20849 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL9A1P20849 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL9A1P20849 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC15.89■□□□□ 0.13
COL9A1P20849 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC15.89■□□□□ 0.13
COL9A1P20849 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL9A1P20849 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
COL9A1P20849 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL9A1P20849 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL9A1P20849 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL9A1P20849 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL9A1P20849 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL9A1P20849 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL9A1P20849 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL9A1P20849 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
COL9A1P20849 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL9A1P20849 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL9A1P20849 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL9A1P20849 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL9A1P20849 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL9A1P20849 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL9A1P20849 ARAF-202ENST00000377039 1271 ntTSL 2 BASIC15.88■□□□□ 0.13
COL9A1P20849 AC079178.1-201ENST00000420915 656 ntBASIC15.88■□□□□ 0.13
COL9A1P20849 FAM9B-203ENST00000428477 1064 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL9A1P20849 PSMD4P1-201ENST00000433951 1109 ntBASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms