Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AC138951.2-201ENST00000623455 1161 ntBASIC18.27■□□□□ 0.52
HLA-DOAP06340 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC18.27■□□□□ 0.52
HLA-DOAP06340 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HLA-DOAP06340 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC18.27■□□□□ 0.52
HLA-DOAP06340 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HLA-DOAP06340 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
HLA-DOAP06340 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
HLA-DOAP06340 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC18.27■□□□□ 0.51
HLA-DOAP06340 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
HLA-DOAP06340 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
HLA-DOAP06340 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC18.27■□□□□ 0.51
HLA-DOAP06340 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.51
HLA-DOAP06340 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
HLA-DOAP06340 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
HLA-DOAP06340 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC18.27■□□□□ 0.51
HLA-DOAP06340 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
HLA-DOAP06340 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC18.27■□□□□ 0.51
HLA-DOAP06340 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
HLA-DOAP06340 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
HLA-DOAP06340 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC18.26■□□□□ 0.51
HLA-DOAP06340 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC18.26■□□□□ 0.51
HLA-DOAP06340 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HLA-DOAP06340 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
HLA-DOAP06340 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
HLA-DOAP06340 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HLA-DOAP06340 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC18.26■□□□□ 0.51
HLA-DOAP06340 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
HLA-DOAP06340 FOS-202ENST00000535987 1402 ntTSL 2 BASIC18.26■□□□□ 0.51
HLA-DOAP06340 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HLA-DOAP06340 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
HLA-DOAP06340 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HLA-DOAP06340 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HLA-DOAP06340 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HLA-DOAP06340 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HLA-DOAP06340 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HLA-DOAP06340 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HLA-DOAP06340 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC18.26■□□□□ 0.51
HLA-DOAP06340 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HLA-DOAP06340 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC18.26■□□□□ 0.51
HLA-DOAP06340 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HLA-DOAP06340 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC18.26■□□□□ 0.51
HLA-DOAP06340 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC18.26■□□□□ 0.51
HLA-DOAP06340 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC18.26■□□□□ 0.51
HLA-DOAP06340 AC132938.4-201ENST00000623835 848 ntBASIC18.26■□□□□ 0.51
HLA-DOAP06340 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC18.26■□□□□ 0.51
HLA-DOAP06340 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC18.26■□□□□ 0.51
HLA-DOAP06340 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HLA-DOAP06340 AL513523.2-202ENST00000427283 2040 ntBASIC18.26■□□□□ 0.51
HLA-DOAP06340 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC18.26■□□□□ 0.51
HLA-DOAP06340 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
HLA-DOAP06340 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC18.26■□□□□ 0.51
HLA-DOAP06340 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
HLA-DOAP06340 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HLA-DOAP06340 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HLA-DOAP06340 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
HLA-DOAP06340 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
HLA-DOAP06340 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC18.26■□□□□ 0.51
HLA-DOAP06340 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HLA-DOAP06340 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HLA-DOAP06340 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HLA-DOAP06340 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HLA-DOAP06340 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
HLA-DOAP06340 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DOAP06340 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC18.25■□□□□ 0.51
HLA-DOAP06340 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DOAP06340 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC18.25■□□□□ 0.51
HLA-DOAP06340 AL138709.1-201ENST00000614840 1693 ntBASIC18.25■□□□□ 0.51
HLA-DOAP06340 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DOAP06340 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DOAP06340 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
HLA-DOAP06340 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DOAP06340 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DOAP06340 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DOAP06340 AL645937.2-201ENST00000396808 931 ntBASIC18.25■□□□□ 0.51
HLA-DOAP06340 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC18.25■□□□□ 0.51
HLA-DOAP06340 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC18.25■□□□□ 0.51
HLA-DOAP06340 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC18.25■□□□□ 0.51
HLA-DOAP06340 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DOAP06340 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC18.25■□□□□ 0.51
HLA-DOAP06340 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC18.25■□□□□ 0.51
HLA-DOAP06340 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC18.25■□□□□ 0.51
HLA-DOAP06340 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC18.25■□□□□ 0.51
HLA-DOAP06340 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC18.25■□□□□ 0.51
HLA-DOAP06340 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC18.25■□□□□ 0.51
HLA-DOAP06340 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DOAP06340 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DOAP06340 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DOAP06340 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DOAP06340 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC18.25■□□□□ 0.51
HLA-DOAP06340 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DOAP06340 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC18.25■□□□□ 0.51
HLA-DOAP06340 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
HLA-DOAP06340 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DOAP06340 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
HLA-DOAP06340 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DOAP06340 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC18.25■□□□□ 0.51
HLA-DOAP06340 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DOAP06340 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC18.25■□□□□ 0.51
HLA-DOAP06340 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DOAP06340 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms