Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
USH2AO75445 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
USH2AO75445 HLA-J-204ENST00000495278 958 ntBASIC6.76□□□□□ -1.33
USH2AO75445 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC6.76□□□□□ -1.33
USH2AO75445 AC007952.4-201ENST00000573866 637 ntBASIC6.76□□□□□ -1.33
USH2AO75445 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
USH2AO75445 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC6.76□□□□□ -1.33
USH2AO75445 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC6.76□□□□□ -1.33
USH2AO75445 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
USH2AO75445 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
USH2AO75445 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
USH2AO75445 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
USH2AO75445 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC6.76□□□□□ -1.33
USH2AO75445 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
USH2AO75445 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC6.76□□□□□ -1.33
USH2AO75445 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
USH2AO75445 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC6.76□□□□□ -1.33
USH2AO75445 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC6.76□□□□□ -1.33
USH2AO75445 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC6.76□□□□□ -1.33
USH2AO75445 RN7SKP109-201ENST00000410592 316 ntBASIC6.76□□□□□ -1.33
USH2AO75445 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC6.76□□□□□ -1.33
USH2AO75445 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
USH2AO75445 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC6.76□□□□□ -1.33
USH2AO75445 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC6.76□□□□□ -1.33
USH2AO75445 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC6.76□□□□□ -1.33
USH2AO75445 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC6.76□□□□□ -1.33
USH2AO75445 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC6.76□□□□□ -1.33
USH2AO75445 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC6.76□□□□□ -1.33
USH2AO75445 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC6.76□□□□□ -1.33
USH2AO75445 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC6.76□□□□□ -1.33
USH2AO75445 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
USH2AO75445 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
USH2AO75445 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
USH2AO75445 MPI-203ENST00000535694 1523 ntTSL 2 BASIC6.76□□□□□ -1.33
USH2AO75445 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
USH2AO75445 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
USH2AO75445 MAD2L1BP-201ENST00000372171 1301 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
USH2AO75445 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC6.76□□□□□ -1.33
USH2AO75445 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
USH2AO75445 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
USH2AO75445 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
USH2AO75445 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
USH2AO75445 SURF4-203ENST00000371991 715 ntTSL 3 BASIC6.76□□□□□ -1.33
USH2AO75445 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC6.76□□□□□ -1.33
USH2AO75445 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC6.76□□□□□ -1.33
USH2AO75445 CBR3-AS1-206ENST00000608632 659 ntTSL 5 BASIC6.76□□□□□ -1.33
USH2AO75445 LINC01398-202ENST00000634819 1292 ntTSL 5 BASIC6.76□□□□□ -1.33
USH2AO75445 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC6.76□□□□□ -1.33
USH2AO75445 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC6.76□□□□□ -1.33
USH2AO75445 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
USH2AO75445 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC6.76□□□□□ -1.33
USH2AO75445 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC6.76□□□□□ -1.33
USH2AO75445 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC6.76□□□□□ -1.33
USH2AO75445 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC6.76□□□□□ -1.33
USH2AO75445 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
USH2AO75445 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
USH2AO75445 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
USH2AO75445 LRRFIP1P1-201ENST00000498774 2246 ntBASIC6.76□□□□□ -1.33
USH2AO75445 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC6.76□□□□□ -1.33
USH2AO75445 AL672207.1-201ENST00000328462 1570 ntBASIC6.76□□□□□ -1.33
USH2AO75445 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
USH2AO75445 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC6.76□□□□□ -1.33
USH2AO75445 AC244394.1-201ENST00000435000 1665 ntBASIC6.76□□□□□ -1.33
USH2AO75445 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
USH2AO75445 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC6.76□□□□□ -1.33
USH2AO75445 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC6.76□□□□□ -1.33
USH2AO75445 BAX-205ENST00000391871 687 ntTSL 5 BASIC6.76□□□□□ -1.33
USH2AO75445 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC6.76□□□□□ -1.33
USH2AO75445 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC6.76□□□□□ -1.33
USH2AO75445 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC6.76□□□□□ -1.33
USH2AO75445 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC6.76□□□□□ -1.33
USH2AO75445 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC6.76□□□□□ -1.33
USH2AO75445 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC6.76□□□□□ -1.33
USH2AO75445 AMT-233ENST00000636522 1620 ntTSL 2 BASIC6.76□□□□□ -1.33
USH2AO75445 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC6.76□□□□□ -1.33
USH2AO75445 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC6.76□□□□□ -1.33
USH2AO75445 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
USH2AO75445 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC6.76□□□□□ -1.33
USH2AO75445 AMT-239ENST00000636865 1914 ntTSL 5 BASIC6.76□□□□□ -1.33
USH2AO75445 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC6.76□□□□□ -1.33
USH2AO75445 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC6.76□□□□□ -1.33
USH2AO75445 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC6.76□□□□□ -1.33
USH2AO75445 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC6.76□□□□□ -1.33
USH2AO75445 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC6.76□□□□□ -1.33
USH2AO75445 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC6.75□□□□□ -1.33
USH2AO75445 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC6.75□□□□□ -1.33
USH2AO75445 FXYD6-208ENST00000529335 708 ntTSL 3 BASIC6.75□□□□□ -1.33
USH2AO75445 AC005746.2-201ENST00000585765 470 ntTSL 5 BASIC6.75□□□□□ -1.33
USH2AO75445 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC6.75□□□□□ -1.33
USH2AO75445 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC6.75□□□□□ -1.33
USH2AO75445 RFPL3-201ENST00000249007 1488 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC6.75□□□□□ -1.33
USH2AO75445 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 AC006449.5-201ENST00000610658 2098 ntBASIC6.75□□□□□ -1.33
USH2AO75445 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms