Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 BCAS2P2-201ENST00000425064 674 ntBASIC21.34■■□□□ 1.01
NPHP4O75161 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC21.34■■□□□ 1.01
NPHP4O75161 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC21.34■■□□□ 1.01
NPHP4O75161 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC21.34■■□□□ 1.01
NPHP4O75161 AC027237.1-201ENST00000560942 655 ntBASIC21.34■■□□□ 1.01
NPHP4O75161 AC093752.3-201ENST00000567343 901 ntBASIC21.34■■□□□ 1.01
NPHP4O75161 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC21.34■■□□□ 1.01
NPHP4O75161 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC21.34■■□□□ 1.01
NPHP4O75161 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC21.34■■□□□ 1.01
NPHP4O75161 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC21.34■■□□□ 1.01
NPHP4O75161 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
NPHP4O75161 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
NPHP4O75161 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC21.34■■□□□ 1.01
NPHP4O75161 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
NPHP4O75161 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
NPHP4O75161 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
NPHP4O75161 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC21.33■■□□□ 1.01
NPHP4O75161 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC21.33■■□□□ 1.01
NPHP4O75161 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC21.33■■□□□ 1.01
NPHP4O75161 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
NPHP4O75161 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC21.33■■□□□ 1.01
NPHP4O75161 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC21.33■■□□□ 1.01
NPHP4O75161 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC21.33■■□□□ 1.01
NPHP4O75161 IL9RP3-201ENST00000442856 1674 ntBASIC21.33■■□□□ 1.01
NPHP4O75161 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
NPHP4O75161 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
NPHP4O75161 HIST2H2BA-201ENST00000412169 381 ntBASIC21.33■■□□□ 1.01
NPHP4O75161 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
NPHP4O75161 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC21.33■■□□□ 1.01
NPHP4O75161 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC21.33■■□□□ 1.01
NPHP4O75161 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC21.33■■□□□ 1.01
NPHP4O75161 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC21.33■■□□□ 1.01
NPHP4O75161 NUDT4P2-201ENST00000578341 546 ntBASIC21.33■■□□□ 1.01
NPHP4O75161 HKR1-225ENST00000592168 566 ntTSL 4 BASIC21.33■■□□□ 1.01
NPHP4O75161 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC21.33■■□□□ 1.01
NPHP4O75161 CMC2-224ENST00000630396 481 ntTSL 5 BASIC21.33■■□□□ 1.01
NPHP4O75161 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
NPHP4O75161 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
NPHP4O75161 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
NPHP4O75161 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC21.33■■□□□ 1
NPHP4O75161 STK26-204ENST00000481105 1835 ntTSL 2 BASIC21.33■■□□□ 1
NPHP4O75161 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
NPHP4O75161 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC21.33■■□□□ 1
NPHP4O75161 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1
NPHP4O75161 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
NPHP4O75161 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NPHP4O75161 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NPHP4O75161 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
NPHP4O75161 AC006058.4-201ENST00000624016 1670 ntBASIC21.32■■□□□ 1
NPHP4O75161 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
NPHP4O75161 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC21.32■■□□□ 1
NPHP4O75161 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC21.32■■□□□ 1
NPHP4O75161 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
NPHP4O75161 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC21.32■■□□□ 1
NPHP4O75161 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NPHP4O75161 NHP2-202ENST00000314397 599 ntTSL 2 BASIC21.32■■□□□ 1
NPHP4O75161 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC21.32■■□□□ 1
NPHP4O75161 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC21.32■■□□□ 1
NPHP4O75161 AGPAT5P1-201ENST00000455855 1019 ntBASIC21.32■■□□□ 1
NPHP4O75161 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC21.32■■□□□ 1
NPHP4O75161 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC21.32■■□□□ 1
NPHP4O75161 RN7SL81P-201ENST00000493781 261 ntBASIC21.32■■□□□ 1
NPHP4O75161 MRPL22P1-201ENST00000505398 616 ntBASIC21.32■■□□□ 1
NPHP4O75161 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC21.32■■□□□ 1
NPHP4O75161 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC21.32■■□□□ 1
NPHP4O75161 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC21.32■■□□□ 1
NPHP4O75161 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
NPHP4O75161 AC009884.2-201ENST00000603110 324 ntBASIC21.32■■□□□ 1
NPHP4O75161 MIR6720-201ENST00000611664 98 ntBASIC21.32■■□□□ 1
NPHP4O75161 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC21.32■■□□□ 1
NPHP4O75161 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NPHP4O75161 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NPHP4O75161 AL645608.8-201ENST00000606034 2086 ntBASIC21.32■■□□□ 1
NPHP4O75161 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC21.32■■□□□ 1
NPHP4O75161 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
NPHP4O75161 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC21.32■■□□□ 1
NPHP4O75161 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC21.32■■□□□ 1
NPHP4O75161 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC21.32■■□□□ 1
NPHP4O75161 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NPHP4O75161 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
NPHP4O75161 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC21.32■■□□□ 1
NPHP4O75161 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC21.32■■□□□ 1
NPHP4O75161 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
NPHP4O75161 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
NPHP4O75161 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC21.32■■□□□ 1
NPHP4O75161 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC21.32■■□□□ 1
NPHP4O75161 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
NPHP4O75161 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC21.31■■□□□ 1
NPHP4O75161 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC21.31■■□□□ 1
NPHP4O75161 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NPHP4O75161 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.31■■□□□ 1
NPHP4O75161 RN7SKP230-201ENST00000365642 335 ntBASIC21.31■■□□□ 1
NPHP4O75161 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NPHP4O75161 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NPHP4O75161 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC21.31■■□□□ 1
NPHP4O75161 DDX39AP1-201ENST00000445147 1181 ntBASIC21.31■■□□□ 1
NPHP4O75161 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC21.31■■□□□ 1
NPHP4O75161 ORAOV1P1-201ENST00000503108 395 ntBASIC21.31■■□□□ 1
NPHP4O75161 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
NPHP4O75161 AP003398.1-201ENST00000531124 318 ntBASIC21.31■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms