Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSH4O15457 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSH4O15457 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
MSH4O15457 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
MSH4O15457 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
MSH4O15457 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSH4O15457 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSH4O15457 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSH4O15457 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC17.4■□□□□ 0.38
MSH4O15457 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
MSH4O15457 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSH4O15457 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSH4O15457 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSH4O15457 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSH4O15457 PGR-210ENST00000619228 3038 ntTSL 5 BASIC17.4■□□□□ 0.38
MSH4O15457 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSH4O15457 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSH4O15457 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.4■□□□□ 0.38
MSH4O15457 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
MSH4O15457 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MSH4O15457 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC17.4■□□□□ 0.38
MSH4O15457 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MSH4O15457 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSH4O15457 AC104457.1-201ENST00000401024 814 ntBASIC17.4■□□□□ 0.38
MSH4O15457 WBP2-203ENST00000433525 928 ntTSL 2 BASIC17.4■□□□□ 0.38
MSH4O15457 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC17.4■□□□□ 0.38
MSH4O15457 TDH-203ENST00000531764 1110 ntBASIC17.4■□□□□ 0.38
MSH4O15457 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC17.4■□□□□ 0.38
MSH4O15457 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC17.4■□□□□ 0.38
MSH4O15457 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSH4O15457 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC17.4■□□□□ 0.38
MSH4O15457 ATF5-205ENST00000600336 682 ntTSL 2 BASIC17.4■□□□□ 0.38
MSH4O15457 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC17.4■□□□□ 0.38
MSH4O15457 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC17.4■□□□□ 0.38
MSH4O15457 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MSH4O15457 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSH4O15457 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MSH4O15457 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC17.4■□□□□ 0.38
MSH4O15457 AC093525.8-201ENST00000624099 1342 ntBASIC17.4■□□□□ 0.38
MSH4O15457 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC17.4■□□□□ 0.38
MSH4O15457 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSH4O15457 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
MSH4O15457 AC007787.1-201ENST00000588095 1583 ntBASIC17.4■□□□□ 0.38
MSH4O15457 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MSH4O15457 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSH4O15457 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC17.39■□□□□ 0.38
MSH4O15457 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
MSH4O15457 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC17.39■□□□□ 0.38
MSH4O15457 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSH4O15457 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSH4O15457 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
MSH4O15457 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSH4O15457 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.39■□□□□ 0.37
MSH4O15457 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC17.39■□□□□ 0.37
MSH4O15457 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSH4O15457 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
MSH4O15457 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
MSH4O15457 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC17.39■□□□□ 0.37
MSH4O15457 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSH4O15457 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSH4O15457 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
MSH4O15457 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
MSH4O15457 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSH4O15457 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
MSH4O15457 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSH4O15457 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSH4O15457 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC17.39■□□□□ 0.37
MSH4O15457 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
MSH4O15457 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
MSH4O15457 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC17.39■□□□□ 0.37
MSH4O15457 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC17.39■□□□□ 0.37
MSH4O15457 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
MSH4O15457 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC17.39■□□□□ 0.37
MSH4O15457 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC17.39■□□□□ 0.37
MSH4O15457 AC015936.2-201ENST00000593177 259 ntBASIC17.39■□□□□ 0.37
MSH4O15457 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSH4O15457 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
MSH4O15457 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC17.39■□□□□ 0.37
MSH4O15457 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
MSH4O15457 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC17.39■□□□□ 0.37
MSH4O15457 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
MSH4O15457 KRT8P44-201ENST00000441609 1350 ntBASIC17.39■□□□□ 0.37
MSH4O15457 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC17.39■□□□□ 0.37
MSH4O15457 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSH4O15457 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSH4O15457 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
MSH4O15457 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
MSH4O15457 STRN-202ENST00000379213 2254 ntTSL 5 BASIC17.38■□□□□ 0.37
MSH4O15457 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC17.38■□□□□ 0.37
MSH4O15457 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSH4O15457 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
MSH4O15457 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
MSH4O15457 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSH4O15457 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSH4O15457 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSH4O15457 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
MSH4O15457 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC17.38■□□□□ 0.37
MSH4O15457 CICP6-201ENST00000457191 2729 ntBASIC17.38■□□□□ 0.37
MSH4O15457 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC17.38■□□□□ 0.37
MSH4O15457 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms