Protein–RNA interactions for Protein: Q9Y2J0

RPH3A, Rabphilin-3A, humanhuman

Predicted RBP Predictions only

Length 694 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPH3AQ9Y2J0 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 EEF1DP4-201ENST00000446006 880 ntBASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 REEP4-207ENST00000523293 913 ntTSL 3 BASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 AL596325.1-201ENST00000563991 1082 ntBASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 AC104794.3-201ENST00000566840 1248 ntBASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 TEX48-202ENST00000612244 662 ntTSL 3 BASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 AC025048.6-201ENST00000634326 1161 ntBASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 VILL-207ENST00000465644 1857 ntTSL 5 BASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC14.41□□□□□ -0.1
RPH3AQ9Y2J0 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 SPDYE18-201ENST00000510091 1050 ntBASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 AC025048.3-201ENST00000590609 569 ntBASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 AC004233.3-201ENST00000607794 1269 ntBASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 AC009118.2-201ENST00000613275 655 ntBASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 AC005702.4-201ENST00000618393 416 ntBASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 AC004461.2-201ENST00000629517 803 ntBASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPH3AQ9Y2J0 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RPH3AQ9Y2J0 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
RPH3AQ9Y2J0 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC14.39□□□□□ -0.11
RPH3AQ9Y2J0 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC14.39□□□□□ -0.11
RPH3AQ9Y2J0 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC14.39□□□□□ -0.11
RPH3AQ9Y2J0 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RPH3AQ9Y2J0 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RPH3AQ9Y2J0 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RPH3AQ9Y2J0 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
RPH3AQ9Y2J0 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RPH3AQ9Y2J0 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms