Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC54Q8NEL0 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 STK33-217ENST00000534493 1895 ntTSL 2 BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 C18orf15-201ENST00000623680 2534 ntBASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 ZBTB11-201ENST00000312938 6020 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 SPDYE17-201ENST00000412399 783 ntBASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 AC026396.1-201ENST00000419388 421 ntBASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 SLC25A39P2-201ENST00000537614 270 ntBASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 SPIB-207ENST00000597855 564 ntTSL 4 BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 NME4-212ENST00000621774 904 ntTSL 3 BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 MIR193BHG-211ENST00000641433 5365 ntBASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC54Q8NEL0 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC54Q8NEL0 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC54Q8NEL0 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
CCDC54Q8NEL0 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC54Q8NEL0 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC54Q8NEL0 PARN-202ENST00000420015 2360 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC54Q8NEL0 SLC9A7P1-201ENST00000554295 3311 ntBASIC13.66□□□□□ -0.22
CCDC54Q8NEL0 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC54Q8NEL0 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC54Q8NEL0 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC13.66□□□□□ -0.22
CCDC54Q8NEL0 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC54Q8NEL0 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
CCDC54Q8NEL0 AC018892.3-201ENST00000623986 2499 ntBASIC13.66□□□□□ -0.22
CCDC54Q8NEL0 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC54Q8NEL0 LINC01101-201ENST00000622953 1884 ntBASIC13.66□□□□□ -0.22
CCDC54Q8NEL0 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC13.66□□□□□ -0.22
CCDC54Q8NEL0 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC54Q8NEL0 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC54Q8NEL0 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC54Q8NEL0 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC54Q8NEL0 FAM45BP-202ENST00000592932 1624 ntBASIC13.66□□□□□ -0.22
CCDC54Q8NEL0 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC54Q8NEL0 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC54Q8NEL0 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC54Q8NEL0 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
CCDC54Q8NEL0 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
CCDC54Q8NEL0 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC13.66□□□□□ -0.22
CCDC54Q8NEL0 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC13.66□□□□□ -0.22
CCDC54Q8NEL0 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC13.66□□□□□ -0.22
CCDC54Q8NEL0 HTR5BP-201ENST00000430851 1154 ntBASIC13.66□□□□□ -0.22
CCDC54Q8NEL0 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
CCDC54Q8NEL0 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC54Q8NEL0 AC069335.1-201ENST00000489972 472 ntBASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms