Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RC3H1Q5TC82 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RC3H1Q5TC82 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
RC3H1Q5TC82 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
RC3H1Q5TC82 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC19.3■□□□□ 0.68
RC3H1Q5TC82 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC19.3■□□□□ 0.68
RC3H1Q5TC82 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC19.3■□□□□ 0.68
RC3H1Q5TC82 RPL5P21-201ENST00000404620 815 ntBASIC19.3■□□□□ 0.68
RC3H1Q5TC82 RN7SKP175-201ENST00000408472 289 ntBASIC19.3■□□□□ 0.68
RC3H1Q5TC82 AC069218.1-201ENST00000435269 762 ntBASIC19.3■□□□□ 0.68
RC3H1Q5TC82 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC19.3■□□□□ 0.68
RC3H1Q5TC82 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC19.3■□□□□ 0.68
RC3H1Q5TC82 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
RC3H1Q5TC82 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC19.3■□□□□ 0.68
RC3H1Q5TC82 AC103988.2-201ENST00000561804 725 ntBASIC19.3■□□□□ 0.68
RC3H1Q5TC82 SNORD3B-2-202ENST00000571722 791 ntBASIC19.3■□□□□ 0.68
RC3H1Q5TC82 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RC3H1Q5TC82 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC19.3■□□□□ 0.68
RC3H1Q5TC82 AC020922.3-201ENST00000595064 547 ntBASIC19.3■□□□□ 0.68
RC3H1Q5TC82 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC19.3■□□□□ 0.68
RC3H1Q5TC82 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RC3H1Q5TC82 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RC3H1Q5TC82 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
RC3H1Q5TC82 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RC3H1Q5TC82 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RC3H1Q5TC82 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RC3H1Q5TC82 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RC3H1Q5TC82 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
RC3H1Q5TC82 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC19.29■□□□□ 0.68
RC3H1Q5TC82 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC19.29■□□□□ 0.68
RC3H1Q5TC82 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC19.29■□□□□ 0.68
RC3H1Q5TC82 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
RC3H1Q5TC82 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC19.29■□□□□ 0.68
RC3H1Q5TC82 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
RC3H1Q5TC82 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
RC3H1Q5TC82 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC19.29■□□□□ 0.68
RC3H1Q5TC82 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC19.29■□□□□ 0.68
RC3H1Q5TC82 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RC3H1Q5TC82 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC19.29■□□□□ 0.68
RC3H1Q5TC82 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC19.29■□□□□ 0.68
RC3H1Q5TC82 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
RC3H1Q5TC82 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RC3H1Q5TC82 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RC3H1Q5TC82 GHSR-202ENST00000427970 912 ntBASIC19.29■□□□□ 0.68
RC3H1Q5TC82 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC19.29■□□□□ 0.68
RC3H1Q5TC82 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RC3H1Q5TC82 LINC02447-202ENST00000501888 2146 ntBASIC19.29■□□□□ 0.68
RC3H1Q5TC82 AC026434.2-201ENST00000506094 1078 ntBASIC19.29■□□□□ 0.68
RC3H1Q5TC82 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
RC3H1Q5TC82 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC19.29■□□□□ 0.68
RC3H1Q5TC82 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC19.29■□□□□ 0.68
RC3H1Q5TC82 MIR3147-201ENST00000577811 66 ntBASIC19.29■□□□□ 0.68
RC3H1Q5TC82 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RC3H1Q5TC82 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC19.29■□□□□ 0.68
RC3H1Q5TC82 AL136301.1-201ENST00000615830 422 ntBASIC19.29■□□□□ 0.68
RC3H1Q5TC82 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC19.29■□□□□ 0.68
RC3H1Q5TC82 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
RC3H1Q5TC82 AC127383.1-201ENST00000444697 1800 ntBASIC19.29■□□□□ 0.68
RC3H1Q5TC82 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC19.29■□□□□ 0.68
RC3H1Q5TC82 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC19.29■□□□□ 0.68
RC3H1Q5TC82 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RC3H1Q5TC82 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RC3H1Q5TC82 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
RC3H1Q5TC82 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RC3H1Q5TC82 AC080080.1-201ENST00000625121 2420 ntBASIC19.29■□□□□ 0.68
RC3H1Q5TC82 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RC3H1Q5TC82 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RC3H1Q5TC82 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RC3H1Q5TC82 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RC3H1Q5TC82 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RC3H1Q5TC82 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RC3H1Q5TC82 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RC3H1Q5TC82 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC19.28■□□□□ 0.68
RC3H1Q5TC82 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC19.28■□□□□ 0.68
RC3H1Q5TC82 PDIA3P2-201ENST00000428073 158 ntBASIC19.28■□□□□ 0.68
RC3H1Q5TC82 AC104784.1-201ENST00000473096 294 ntBASIC19.28■□□□□ 0.68
RC3H1Q5TC82 IQSEC3P1-201ENST00000538799 536 ntBASIC19.28■□□□□ 0.68
RC3H1Q5TC82 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC19.28■□□□□ 0.68
RC3H1Q5TC82 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RC3H1Q5TC82 AL160314.3-201ENST00000556041 767 ntBASIC19.28■□□□□ 0.68
RC3H1Q5TC82 AC100827.2-201ENST00000563214 1194 ntBASIC19.28■□□□□ 0.68
RC3H1Q5TC82 AL132994.2-201ENST00000603120 687 ntBASIC19.28■□□□□ 0.68
RC3H1Q5TC82 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC19.28■□□□□ 0.68
RC3H1Q5TC82 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC19.28■□□□□ 0.68
RC3H1Q5TC82 AC006453.1-201ENST00000636037 1257 ntBASIC19.28■□□□□ 0.68
RC3H1Q5TC82 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC19.28■□□□□ 0.68
RC3H1Q5TC82 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RC3H1Q5TC82 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RC3H1Q5TC82 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
RC3H1Q5TC82 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
RC3H1Q5TC82 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RC3H1Q5TC82 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RC3H1Q5TC82 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC19.28■□□□□ 0.68
RC3H1Q5TC82 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC19.28■□□□□ 0.68
RC3H1Q5TC82 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC19.28■□□□□ 0.68
RC3H1Q5TC82 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RC3H1Q5TC82 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RC3H1Q5TC82 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
RC3H1Q5TC82 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RC3H1Q5TC82 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 60.9 ms