Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC12.71□□□□□ -0.37
LMO4P61968 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC12.71□□□□□ -0.37
LMO4P61968 SAMD11P1-201ENST00000571429 661 ntBASIC12.71□□□□□ -0.37
LMO4P61968 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
LMO4P61968 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC12.71□□□□□ -0.37
LMO4P61968 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
LMO4P61968 GPR182-203ENST00000622922 591 ntBASIC12.71□□□□□ -0.37
LMO4P61968 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
LMO4P61968 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
LMO4P61968 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC12.71□□□□□ -0.38
LMO4P61968 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.38
LMO4P61968 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
LMO4P61968 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC12.71□□□□□ -0.38
LMO4P61968 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
LMO4P61968 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
LMO4P61968 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
LMO4P61968 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
LMO4P61968 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
LMO4P61968 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.38
LMO4P61968 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
LMO4P61968 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
LMO4P61968 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.38
LMO4P61968 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
LMO4P61968 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
LMO4P61968 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC12.7□□□□□ -0.38
LMO4P61968 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
LMO4P61968 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC12.7□□□□□ -0.38
LMO4P61968 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
LMO4P61968 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC12.7□□□□□ -0.38
LMO4P61968 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
LMO4P61968 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC12.7□□□□□ -0.38
LMO4P61968 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
LMO4P61968 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
LMO4P61968 TPM3P8-201ENST00000330554 643 ntBASIC12.7□□□□□ -0.38
LMO4P61968 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
LMO4P61968 MPV17-205ENST00000402310 906 ntTSL 5 BASIC12.7□□□□□ -0.38
LMO4P61968 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
LMO4P61968 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC12.7□□□□□ -0.38
LMO4P61968 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC12.7□□□□□ -0.38
LMO4P61968 PFN2-215ENST00000497148 743 ntTSL 4 BASIC12.7□□□□□ -0.38
LMO4P61968 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC12.7□□□□□ -0.38
LMO4P61968 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
LMO4P61968 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC12.7□□□□□ -0.38
LMO4P61968 DERL2-202ENST00000570848 657 ntTSL 5 BASIC12.7□□□□□ -0.38
LMO4P61968 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC12.7□□□□□ -0.38
LMO4P61968 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
LMO4P61968 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC12.7□□□□□ -0.38
LMO4P61968 LRRC59-203ENST00000576448 1531 ntBASIC12.7□□□□□ -0.38
LMO4P61968 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC12.7□□□□□ -0.38
LMO4P61968 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
LMO4P61968 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC12.7□□□□□ -0.38
LMO4P61968 CICP13-201ENST00000422015 2789 ntBASIC12.7□□□□□ -0.38
LMO4P61968 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
LMO4P61968 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
LMO4P61968 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC12.7□□□□□ -0.38
LMO4P61968 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC12.7□□□□□ -0.38
LMO4P61968 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC12.7□□□□□ -0.38
LMO4P61968 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
LMO4P61968 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
LMO4P61968 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC12.7□□□□□ -0.38
LMO4P61968 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC12.7□□□□□ -0.38
LMO4P61968 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC12.7□□□□□ -0.38
LMO4P61968 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
LMO4P61968 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
LMO4P61968 KRT8P14-201ENST00000414254 1442 ntBASIC12.7□□□□□ -0.38
LMO4P61968 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC12.7□□□□□ -0.38
LMO4P61968 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
LMO4P61968 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
LMO4P61968 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
LMO4P61968 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
LMO4P61968 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LMO4P61968 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
LMO4P61968 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
LMO4P61968 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LMO4P61968 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LMO4P61968 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC12.69□□□□□ -0.38
LMO4P61968 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LMO4P61968 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
LMO4P61968 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
LMO4P61968 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC12.69□□□□□ -0.38
LMO4P61968 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LMO4P61968 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
LMO4P61968 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LMO4P61968 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC12.69□□□□□ -0.38
LMO4P61968 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
LMO4P61968 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LMO4P61968 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
LMO4P61968 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC12.69□□□□□ -0.38
LMO4P61968 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
LMO4P61968 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LMO4P61968 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LMO4P61968 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LMO4P61968 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LMO4P61968 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC12.69□□□□□ -0.38
LMO4P61968 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LMO4P61968 LSM5-207ENST00000410044 687 ntTSL 3 BASIC12.69□□□□□ -0.38
LMO4P61968 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LMO4P61968 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC12.69□□□□□ -0.38
LMO4P61968 FAM86HP-204ENST00000513466 959 ntBASIC12.69□□□□□ -0.38
LMO4P61968 RIT1-205ENST00000539040 919 ntTSL 2 BASIC12.69□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms