Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC15.36■□□□□ 0.05
CXCL12P48061 AC008267.1-201ENST00000474858 1069 ntBASIC15.36■□□□□ 0.05
CXCL12P48061 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
CXCL12P48061 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC15.36■□□□□ 0.05
CXCL12P48061 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CXCL12P48061 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC15.36■□□□□ 0.05
CXCL12P48061 AL161670.2-201ENST00000557650 1227 ntBASIC15.36■□□□□ 0.05
CXCL12P48061 EID1-202ENST00000560490 584 ntTSL 3 BASIC15.36■□□□□ 0.05
CXCL12P48061 AC013355.1-201ENST00000562625 723 ntBASIC15.36■□□□□ 0.05
CXCL12P48061 RN7SL163P-201ENST00000583100 276 ntBASIC15.36■□□□□ 0.05
CXCL12P48061 AL133499.1-201ENST00000596207 608 ntBASIC15.36■□□□□ 0.05
CXCL12P48061 AC026740.1-201ENST00000607068 791 ntBASIC15.36■□□□□ 0.05
CXCL12P48061 AC022748.3-201ENST00000621828 275 ntBASIC15.36■□□□□ 0.05
CXCL12P48061 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
CXCL12P48061 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CXCL12P48061 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CXCL12P48061 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
CXCL12P48061 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
CXCL12P48061 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CXCL12P48061 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
CXCL12P48061 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC15.36■□□□□ 0.05
CXCL12P48061 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.36■□□□□ 0.05
CXCL12P48061 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CXCL12P48061 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CXCL12P48061 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CXCL12P48061 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
CXCL12P48061 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CXCL12P48061 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CXCL12P48061 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
CXCL12P48061 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC15.35■□□□□ 0.05
CXCL12P48061 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
CXCL12P48061 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC15.35■□□□□ 0.05
CXCL12P48061 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC15.35■□□□□ 0.05
CXCL12P48061 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CXCL12P48061 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CXCL12P48061 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CXCL12P48061 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CXCL12P48061 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
CXCL12P48061 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC15.35■□□□□ 0.05
CXCL12P48061 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CXCL12P48061 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CXCL12P48061 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CXCL12P48061 EIF3FP3-201ENST00000434851 1086 ntBASIC15.35■□□□□ 0.05
CXCL12P48061 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC15.35■□□□□ 0.05
CXCL12P48061 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
CXCL12P48061 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC15.35■□□□□ 0.05
CXCL12P48061 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC15.35■□□□□ 0.05
CXCL12P48061 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC15.35■□□□□ 0.05
CXCL12P48061 AC006480.2-201ENST00000609770 1337 ntBASIC15.35■□□□□ 0.05
CXCL12P48061 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC15.35■□□□□ 0.05
CXCL12P48061 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC15.35■□□□□ 0.05
CXCL12P48061 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CXCL12P48061 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC15.35■□□□□ 0.05
CXCL12P48061 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
CXCL12P48061 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CXCL12P48061 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC15.35■□□□□ 0.05
CXCL12P48061 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CXCL12P48061 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
CXCL12P48061 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC15.35■□□□□ 0.05
CXCL12P48061 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC15.34■□□□□ 0.05
CXCL12P48061 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CXCL12P48061 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CXCL12P48061 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CXCL12P48061 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CXCL12P48061 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CXCL12P48061 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CXCL12P48061 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CXCL12P48061 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
CXCL12P48061 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC15.34■□□□□ 0.05
CXCL12P48061 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC15.34■□□□□ 0.05
CXCL12P48061 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CXCL12P48061 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CXCL12P48061 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CXCL12P48061 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CXCL12P48061 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CXCL12P48061 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CXCL12P48061 AL136309.1-201ENST00000403917 691 ntBASIC15.34■□□□□ 0.05
CXCL12P48061 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
CXCL12P48061 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CXCL12P48061 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CXCL12P48061 RNMTL1P1-201ENST00000454103 560 ntBASIC15.34■□□□□ 0.05
CXCL12P48061 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC15.34■□□□□ 0.05
CXCL12P48061 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC15.34■□□□□ 0.05
CXCL12P48061 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CXCL12P48061 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC15.34■□□□□ 0.05
CXCL12P48061 AC106820.3-201ENST00000561653 397 ntBASIC15.34■□□□□ 0.05
CXCL12P48061 SYT17-208ENST00000568433 812 ntTSL 3 BASIC15.34■□□□□ 0.05
CXCL12P48061 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC15.34■□□□□ 0.05
CXCL12P48061 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CXCL12P48061 AL603764.1-201ENST00000636452 321 ntBASIC15.34■□□□□ 0.05
CXCL12P48061 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CXCL12P48061 AL805961.1-203ENST00000641078 1258 ntBASIC15.34■□□□□ 0.05
CXCL12P48061 AC004923.1-202ENST00000642106 209 ntBASIC15.34■□□□□ 0.05
CXCL12P48061 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
CXCL12P48061 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CXCL12P48061 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CXCL12P48061 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
CXCL12P48061 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC15.34■□□□□ 0.05
CXCL12P48061 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CXCL12P48061 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 64.9 ms