Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC090857.1-201ENST00000527400 390 ntBASIC15.77■□□□□ 0.12
VCANP13611 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC15.77■□□□□ 0.12
VCANP13611 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
VCANP13611 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.77■□□□□ 0.12
VCANP13611 AL645608.8-201ENST00000606034 2086 ntBASIC15.77■□□□□ 0.12
VCANP13611 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VCANP13611 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
VCANP13611 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
VCANP13611 C5orf63-203ENST00000509733 553 ntTSL 4 BASIC15.77■□□□□ 0.11
VCANP13611 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
VCANP13611 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC15.77■□□□□ 0.11
VCANP13611 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC15.77■□□□□ 0.11
VCANP13611 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC15.77■□□□□ 0.11
VCANP13611 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
VCANP13611 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
VCANP13611 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
VCANP13611 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
VCANP13611 BX323043.1-201ENST00000641006 1765 ntBASIC15.77■□□□□ 0.11
VCANP13611 AC239868.1-201ENST00000369385 493 ntBASIC15.76■□□□□ 0.11
VCANP13611 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC15.76■□□□□ 0.11
VCANP13611 AC002127.2-201ENST00000444032 792 ntTSL 3 BASIC15.76■□□□□ 0.11
VCANP13611 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VCANP13611 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC15.76■□□□□ 0.11
VCANP13611 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC15.76■□□□□ 0.11
VCANP13611 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC15.76■□□□□ 0.11
VCANP13611 AC084781.1-201ENST00000613737 656 ntBASIC15.76■□□□□ 0.11
VCANP13611 MBLAC2-202ENST00000514906 1936 ntBASIC15.76■□□□□ 0.11
VCANP13611 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VCANP13611 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VCANP13611 KRT8P21-201ENST00000430398 1491 ntBASIC15.76■□□□□ 0.11
VCANP13611 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
VCANP13611 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
VCANP13611 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC15.76■□□□□ 0.11
VCANP13611 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
VCANP13611 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC15.76■□□□□ 0.11
VCANP13611 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC15.76■□□□□ 0.11
VCANP13611 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC15.76■□□□□ 0.11
VCANP13611 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC15.76■□□□□ 0.11
VCANP13611 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VCANP13611 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
VCANP13611 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC15.76■□□□□ 0.11
VCANP13611 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC15.76■□□□□ 0.11
VCANP13611 MYL4-202ENST00000393450 855 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VCANP13611 GLUD1P3-201ENST00000507952 896 ntTSL 2 BASIC15.76■□□□□ 0.11
VCANP13611 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
VCANP13611 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC15.76■□□□□ 0.11
VCANP13611 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC15.76■□□□□ 0.11
VCANP13611 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC15.76■□□□□ 0.11
VCANP13611 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC15.76■□□□□ 0.11
VCANP13611 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC15.76■□□□□ 0.11
VCANP13611 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VCANP13611 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
VCANP13611 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
VCANP13611 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
VCANP13611 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
VCANP13611 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC15.75■□□□□ 0.11
VCANP13611 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VCANP13611 ACTBP8-201ENST00000403258 1108 ntBASIC15.75■□□□□ 0.11
VCANP13611 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC15.75■□□□□ 0.11
VCANP13611 AP003398.1-201ENST00000531124 318 ntBASIC15.75■□□□□ 0.11
VCANP13611 AP000866.5-201ENST00000531241 445 ntTSL 5 BASIC15.75■□□□□ 0.11
VCANP13611 POLD4-208ENST00000532830 904 ntTSL 3 BASIC15.75■□□□□ 0.11
VCANP13611 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC15.75■□□□□ 0.11
VCANP13611 AC015912.3-201ENST00000619432 348 ntBASIC15.75■□□□□ 0.11
VCANP13611 WASH7P-201ENST00000488147 1351 ntBASIC15.75■□□□□ 0.11
VCANP13611 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC15.75■□□□□ 0.11
VCANP13611 GATB-213ENST00000515812 1893 ntTSL 5 BASIC15.75■□□□□ 0.11
VCANP13611 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VCANP13611 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
VCANP13611 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC15.75■□□□□ 0.11
VCANP13611 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VCANP13611 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VCANP13611 AL672207.1-201ENST00000328462 1570 ntBASIC15.75■□□□□ 0.11
VCANP13611 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC15.75■□□□□ 0.11
VCANP13611 PPP1R7-205ENST00000404405 1009 ntTSL 3 BASIC15.75■□□□□ 0.11
VCANP13611 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC15.75■□□□□ 0.11
VCANP13611 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC15.75■□□□□ 0.11
VCANP13611 KHDRBS3-206ENST00000520981 1243 ntTSL 5 BASIC15.75■□□□□ 0.11
VCANP13611 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC15.75■□□□□ 0.11
VCANP13611 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC15.75■□□□□ 0.11
VCANP13611 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VCANP13611 TUBB8P7-204ENST00000567960 1332 ntBASIC15.75■□□□□ 0.11
VCANP13611 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
VCANP13611 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC15.75■□□□□ 0.11
VCANP13611 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VCANP13611 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
VCANP13611 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
VCANP13611 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC15.75■□□□□ 0.11
VCANP13611 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC15.75■□□□□ 0.11
VCANP13611 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
VCANP13611 WNT5A-205ENST00000497027 1299 ntTSL 2 BASIC15.75■□□□□ 0.11
VCANP13611 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC15.75■□□□□ 0.11
VCANP13611 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC15.75■□□□□ 0.11
VCANP13611 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
VCANP13611 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC15.75■□□□□ 0.11
VCANP13611 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC15.75■□□□□ 0.11
VCANP13611 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC15.75■□□□□ 0.11
VCANP13611 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC15.74■□□□□ 0.11
VCANP13611 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
VCANP13611 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms