Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
COL6A3P12111 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL6A3P12111 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL6A3P12111 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
COL6A3P12111 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL6A3P12111 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL6A3P12111 SOD2-205ENST00000444946 917 ntTSL 2 BASIC15.77■□□□□ 0.12
COL6A3P12111 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC15.77■□□□□ 0.12
COL6A3P12111 TGFBI-207ENST00000508076 1034 ntTSL 2 BASIC15.77■□□□□ 0.12
COL6A3P12111 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
COL6A3P12111 EEF1DP7-201ENST00000580496 513 ntBASIC15.77■□□□□ 0.12
COL6A3P12111 NAT9-219ENST00000582524 573 ntTSL 4 BASIC15.77■□□□□ 0.12
COL6A3P12111 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC15.77■□□□□ 0.12
COL6A3P12111 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC15.77■□□□□ 0.12
COL6A3P12111 AC134043.2-201ENST00000624206 2238 ntBASIC15.77■□□□□ 0.12
COL6A3P12111 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
COL6A3P12111 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.11
COL6A3P12111 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL6A3P12111 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
COL6A3P12111 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC15.77■□□□□ 0.11
COL6A3P12111 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL6A3P12111 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.77■□□□□ 0.11
COL6A3P12111 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC15.77■□□□□ 0.11
COL6A3P12111 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL6A3P12111 AC103923.1-201ENST00000453229 1228 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
COL6A3P12111 BIRC5-211ENST00000592734 386 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
COL6A3P12111 AL157414.3-201ENST00000624276 1954 ntBASIC15.76■□□□□ 0.11
COL6A3P12111 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
COL6A3P12111 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC15.76■□□□□ 0.11
COL6A3P12111 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC15.76■□□□□ 0.11
COL6A3P12111 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL6A3P12111 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL6A3P12111 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC15.76■□□□□ 0.11
COL6A3P12111 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL6A3P12111 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL6A3P12111 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL6A3P12111 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
COL6A3P12111 CTBP2P8-201ENST00000422584 1330 ntBASIC15.76■□□□□ 0.11
COL6A3P12111 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL6A3P12111 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC15.76■□□□□ 0.11
COL6A3P12111 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL6A3P12111 NME6-208ENST00000435684 599 ntTSL 2 BASIC15.76■□□□□ 0.11
COL6A3P12111 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
COL6A3P12111 DUTP3-201ENST00000450025 415 ntBASIC15.76■□□□□ 0.11
COL6A3P12111 PHKG1P2-201ENST00000457537 863 ntBASIC15.76■□□□□ 0.11
COL6A3P12111 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC15.76■□□□□ 0.11
COL6A3P12111 AC068867.1-201ENST00000559855 150 ntBASIC15.76■□□□□ 0.11
COL6A3P12111 FBXO36P1-201ENST00000579006 471 ntBASIC15.76■□□□□ 0.11
COL6A3P12111 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC15.76■□□□□ 0.11
COL6A3P12111 HIST1H3B-201ENST00000621411 411 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
COL6A3P12111 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL6A3P12111 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC15.76■□□□□ 0.11
COL6A3P12111 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL6A3P12111 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
COL6A3P12111 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL6A3P12111 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL6A3P12111 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC15.76■□□□□ 0.11
COL6A3P12111 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL6A3P12111 RAN-210ENST00000541630 1475 ntTSL 2 BASIC15.76■□□□□ 0.11
COL6A3P12111 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC15.76■□□□□ 0.11
COL6A3P12111 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL6A3P12111 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC15.76■□□□□ 0.11
COL6A3P12111 PTGER4P2-201ENST00000328411 252 ntBASIC15.76■□□□□ 0.11
COL6A3P12111 AC098657.1-201ENST00000416270 1135 ntBASIC15.76■□□□□ 0.11
COL6A3P12111 PTGER4P3-201ENST00000458150 252 ntBASIC15.76■□□□□ 0.11
COL6A3P12111 BCRP4-201ENST00000506079 804 ntBASIC15.76■□□□□ 0.11
COL6A3P12111 AC092862.1-201ENST00000541534 533 ntBASIC15.76■□□□□ 0.11
COL6A3P12111 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC15.76■□□□□ 0.11
COL6A3P12111 GNG14-201ENST00000640117 210 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
COL6A3P12111 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC15.76■□□□□ 0.11
COL6A3P12111 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC15.76■□□□□ 0.11
COL6A3P12111 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
COL6A3P12111 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL6A3P12111 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC15.76■□□□□ 0.11
COL6A3P12111 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL6A3P12111 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
COL6A3P12111 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL6A3P12111 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC15.75■□□□□ 0.11
COL6A3P12111 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
COL6A3P12111 NQO2-204ENST00000380454 851 ntTSL 2 BASIC15.75■□□□□ 0.11
COL6A3P12111 MIR2392-201ENST00000584881 84 ntBASIC15.75■□□□□ 0.11
COL6A3P12111 KLKP1-202ENST00000597246 1125 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
COL6A3P12111 GPR39-203ENST00000622084 900 ntTSL 5 BASIC15.75■□□□□ 0.11
COL6A3P12111 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
COL6A3P12111 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL6A3P12111 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC15.75■□□□□ 0.11
COL6A3P12111 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL6A3P12111 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC15.75■□□□□ 0.11
COL6A3P12111 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
COL6A3P12111 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
COL6A3P12111 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL6A3P12111 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
COL6A3P12111 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC15.75■□□□□ 0.11
COL6A3P12111 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC15.75■□□□□ 0.11
COL6A3P12111 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC15.75■□□□□ 0.11
COL6A3P12111 HNRNPA1P36-201ENST00000521313 955 ntBASIC15.75■□□□□ 0.11
COL6A3P12111 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
COL6A3P12111 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC15.75■□□□□ 0.11
COL6A3P12111 AC012593.1-214ENST00000586952 767 ntTSL 5 BASIC15.75■□□□□ 0.11
COL6A3P12111 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms