Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
RB1P06400 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
RB1P06400 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
RB1P06400 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RB1P06400 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.35■□□□□ 0.21
RB1P06400 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RB1P06400 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
RB1P06400 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
RB1P06400 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC16.35■□□□□ 0.21
RB1P06400 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RB1P06400 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RB1P06400 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
RB1P06400 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
RB1P06400 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RB1P06400 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
RB1P06400 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RB1P06400 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RB1P06400 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RB1P06400 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC16.35■□□□□ 0.21
RB1P06400 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC16.35■□□□□ 0.21
RB1P06400 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC16.35■□□□□ 0.21
RB1P06400 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC16.35■□□□□ 0.21
RB1P06400 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RB1P06400 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.35■□□□□ 0.21
RB1P06400 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC16.35■□□□□ 0.21
RB1P06400 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC16.35■□□□□ 0.21
RB1P06400 AL354877.1-201ENST00000424412 413 ntBASIC16.35■□□□□ 0.21
RB1P06400 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC16.35■□□□□ 0.21
RB1P06400 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC16.35■□□□□ 0.21
RB1P06400 SDHD-202ENST00000525291 790 ntTSL 3 BASIC16.35■□□□□ 0.21
RB1P06400 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC16.35■□□□□ 0.21
RB1P06400 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC16.35■□□□□ 0.21
RB1P06400 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC16.35■□□□□ 0.21
RB1P06400 AC091544.8-201ENST00000619490 361 ntBASIC16.35■□□□□ 0.21
RB1P06400 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC16.35■□□□□ 0.21
RB1P06400 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
RB1P06400 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
RB1P06400 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RB1P06400 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RB1P06400 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RB1P06400 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
RB1P06400 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
RB1P06400 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RB1P06400 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
RB1P06400 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.35■□□□□ 0.21
RB1P06400 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RB1P06400 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RB1P06400 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
RB1P06400 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
RB1P06400 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
RB1P06400 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC16.34■□□□□ 0.21
RB1P06400 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RB1P06400 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
RB1P06400 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
RB1P06400 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
RB1P06400 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC16.34■□□□□ 0.21
RB1P06400 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RB1P06400 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RB1P06400 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
RB1P06400 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
RB1P06400 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
RB1P06400 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC16.34■□□□□ 0.21
RB1P06400 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
RB1P06400 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
RB1P06400 POM121L8P-201ENST00000417732 1281 ntBASIC16.34■□□□□ 0.21
RB1P06400 POM121L9P-203ENST00000441984 1285 ntBASIC16.34■□□□□ 0.21
RB1P06400 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC16.34■□□□□ 0.21
RB1P06400 CHMP1AP1-201ENST00000445563 662 ntBASIC16.34■□□□□ 0.21
RB1P06400 PFN2-205ENST00000461868 613 ntTSL 2 BASIC16.34■□□□□ 0.21
RB1P06400 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
RB1P06400 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC16.34■□□□□ 0.21
RB1P06400 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
RB1P06400 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC16.34■□□□□ 0.21
RB1P06400 OR10B1P-201ENST00000601666 907 ntBASIC16.34■□□□□ 0.21
RB1P06400 AC073413.1-201ENST00000603927 732 ntBASIC16.34■□□□□ 0.21
RB1P06400 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RB1P06400 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RB1P06400 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RB1P06400 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
RB1P06400 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
RB1P06400 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RB1P06400 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RB1P06400 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
RB1P06400 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
RB1P06400 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
RB1P06400 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.33■□□□□ 0.21
RB1P06400 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
RB1P06400 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
RB1P06400 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC16.33■□□□□ 0.21
RB1P06400 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
RB1P06400 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RB1P06400 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RB1P06400 CRCP-204ENST00000398684 492 ntTSL 2 BASIC16.33■□□□□ 0.2
RB1P06400 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RB1P06400 AC011742.3-201ENST00000439053 820 ntBASIC16.33■□□□□ 0.2
RB1P06400 OARD1-204ENST00000464633 717 ntTSL 2 BASIC16.33■□□□□ 0.2
RB1P06400 RN7SL11P-201ENST00000471305 293 ntBASIC16.33■□□□□ 0.2
RB1P06400 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
RB1P06400 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC16.33■□□□□ 0.2
RB1P06400 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms