Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
COL4A1P02462 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A1P02462 HLA-DPB2-205ENST00000435074 1188 ntBASIC18.66■□□□□ 0.58
COL4A1P02462 FTLP10-202ENST00000505798 471 ntBASIC18.66■□□□□ 0.58
COL4A1P02462 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC18.66■□□□□ 0.58
COL4A1P02462 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A1P02462 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A1P02462 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
COL4A1P02462 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC18.66■□□□□ 0.58
COL4A1P02462 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A1P02462 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC18.66■□□□□ 0.58
COL4A1P02462 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
COL4A1P02462 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A1P02462 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC18.66■□□□□ 0.58
COL4A1P02462 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC18.66■□□□□ 0.58
COL4A1P02462 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
COL4A1P02462 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
COL4A1P02462 AC138696.2-201ENST00000607376 223 ntBASIC18.66■□□□□ 0.58
COL4A1P02462 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC18.66■□□□□ 0.58
COL4A1P02462 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A1P02462 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A1P02462 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC18.66■□□□□ 0.58
COL4A1P02462 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC18.66■□□□□ 0.58
COL4A1P02462 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A1P02462 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A1P02462 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC18.65■□□□□ 0.58
COL4A1P02462 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
COL4A1P02462 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A1P02462 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
COL4A1P02462 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A1P02462 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A1P02462 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A1P02462 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18.65■□□□□ 0.58
COL4A1P02462 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
COL4A1P02462 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A1P02462 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
COL4A1P02462 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC18.65■□□□□ 0.58
COL4A1P02462 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A1P02462 AL137783.1-201ENST00000623494 1896 ntBASIC18.65■□□□□ 0.58
COL4A1P02462 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
COL4A1P02462 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A1P02462 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC18.65■□□□□ 0.58
COL4A1P02462 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC18.65■□□□□ 0.58
COL4A1P02462 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A1P02462 AL160314.3-201ENST00000556041 767 ntBASIC18.65■□□□□ 0.58
COL4A1P02462 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC18.65■□□□□ 0.58
COL4A1P02462 AC079328.1-201ENST00000560358 952 ntBASIC18.65■□□□□ 0.58
COL4A1P02462 FGFR3P5-201ENST00000564496 886 ntBASIC18.65■□□□□ 0.58
COL4A1P02462 KLK3-207ENST00000595952 969 ntTSL 3 BASIC18.65■□□□□ 0.58
COL4A1P02462 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A1P02462 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A1P02462 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC18.65■□□□□ 0.58
COL4A1P02462 PES1-204ENST00000402284 2144 ntTSL 5 BASIC18.65■□□□□ 0.58
COL4A1P02462 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
COL4A1P02462 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC18.65■□□□□ 0.58
COL4A1P02462 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A1P02462 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC18.64■□□□□ 0.58
COL4A1P02462 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
COL4A1P02462 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
COL4A1P02462 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL4A1P02462 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC18.64■□□□□ 0.58
COL4A1P02462 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
COL4A1P02462 AC112693.3-201ENST00000624819 1983 ntBASIC18.64■□□□□ 0.58
COL4A1P02462 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
COL4A1P02462 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
COL4A1P02462 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A1P02462 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A1P02462 RPL5P21-201ENST00000404620 815 ntBASIC18.64■□□□□ 0.57
COL4A1P02462 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A1P02462 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC18.64■□□□□ 0.57
COL4A1P02462 UPF3AP2-201ENST00000457924 1132 ntBASIC18.64■□□□□ 0.57
COL4A1P02462 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC18.64■□□□□ 0.57
COL4A1P02462 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC18.64■□□□□ 0.57
COL4A1P02462 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
COL4A1P02462 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC18.64■□□□□ 0.57
COL4A1P02462 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
COL4A1P02462 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
COL4A1P02462 AC026740.1-201ENST00000607068 791 ntBASIC18.64■□□□□ 0.57
COL4A1P02462 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC18.64■□□□□ 0.57
COL4A1P02462 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC18.64■□□□□ 0.57
COL4A1P02462 AC244452.3-201ENST00000636814 210 ntBASIC18.64■□□□□ 0.57
COL4A1P02462 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC18.64■□□□□ 0.57
COL4A1P02462 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A1P02462 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A1P02462 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A1P02462 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
COL4A1P02462 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A1P02462 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A1P02462 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC18.63■□□□□ 0.57
COL4A1P02462 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.63■□□□□ 0.57
COL4A1P02462 DPM3-202ENST00000368399 517 ntBASIC18.63■□□□□ 0.57
COL4A1P02462 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC18.63■□□□□ 0.57
COL4A1P02462 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A1P02462 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC18.63■□□□□ 0.57
COL4A1P02462 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
COL4A1P02462 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A1P02462 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A1P02462 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC18.63■□□□□ 0.57
COL4A1P02462 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC18.63■□□□□ 0.57
COL4A1P02462 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 63.4 ms