Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC13.15□□□□□ -0.3
ABCA1O95477 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC13.15□□□□□ -0.3
ABCA1O95477 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA1O95477 AC244669.2-201ENST00000612320 853 ntBASIC13.15□□□□□ -0.3
ABCA1O95477 RPS24-214ENST00000613865 538 ntTSL 5 BASIC13.15□□□□□ -0.3
ABCA1O95477 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA1O95477 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA1O95477 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA1O95477 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC13.15□□□□□ -0.3
ABCA1O95477 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA1O95477 AC005622.1-201ENST00000636801 1703 ntBASIC13.15□□□□□ -0.3
ABCA1O95477 RDX-218ENST00000544551 4117 ntTSL 2 BASIC13.15□□□□□ -0.3
ABCA1O95477 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA1O95477 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA1O95477 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA1O95477 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA1O95477 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA1O95477 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA1O95477 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA1O95477 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA1O95477 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
ABCA1O95477 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA1O95477 ZBTB12BP-201ENST00000314232 1122 ntBASIC13.15□□□□□ -0.3
ABCA1O95477 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA1O95477 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA1O95477 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
ABCA1O95477 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA1O95477 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA1O95477 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
ABCA1O95477 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
ABCA1O95477 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC13.15□□□□□ -0.3
ABCA1O95477 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC13.15□□□□□ -0.3
ABCA1O95477 CALR4P-201ENST00000431943 946 ntBASIC13.15□□□□□ -0.3
ABCA1O95477 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
ABCA1O95477 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC13.15□□□□□ -0.3
ABCA1O95477 KRT8P13-201ENST00000463294 1010 ntBASIC13.15□□□□□ -0.3
ABCA1O95477 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA1O95477 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC13.15□□□□□ -0.3
ABCA1O95477 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC13.15□□□□□ -0.3
ABCA1O95477 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA1O95477 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC13.15□□□□□ -0.3
ABCA1O95477 ALOX12P2-203ENST00000570921 1945 ntBASIC13.15□□□□□ -0.3
ABCA1O95477 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC13.15□□□□□ -0.3
ABCA1O95477 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC13.15□□□□□ -0.3
ABCA1O95477 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC13.15□□□□□ -0.3
ABCA1O95477 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC13.15□□□□□ -0.3
ABCA1O95477 BRI3BPP1-201ENST00000594224 787 ntBASIC13.15□□□□□ -0.3
ABCA1O95477 AC133539.2-201ENST00000604757 467 ntBASIC13.15□□□□□ -0.3
ABCA1O95477 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA1O95477 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC13.15□□□□□ -0.3
ABCA1O95477 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC13.15□□□□□ -0.3
ABCA1O95477 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA1O95477 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
ABCA1O95477 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
ABCA1O95477 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
ABCA1O95477 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC13.15□□□□□ -0.31
ABCA1O95477 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
ABCA1O95477 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.31
ABCA1O95477 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.31
ABCA1O95477 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC13.15□□□□□ -0.31
ABCA1O95477 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA1O95477 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA1O95477 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA1O95477 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC13.14□□□□□ -0.31
ABCA1O95477 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC13.14□□□□□ -0.31
ABCA1O95477 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
ABCA1O95477 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA1O95477 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA1O95477 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA1O95477 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA1O95477 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA1O95477 TEX30-203ENST00000376022 828 ntTSL 2 BASIC13.14□□□□□ -0.31
ABCA1O95477 TARDBPP1-201ENST00000442013 1203 ntBASIC13.14□□□□□ -0.31
ABCA1O95477 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA1O95477 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA1O95477 AC093433.1-201ENST00000458048 571 ntBASIC13.14□□□□□ -0.31
ABCA1O95477 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
ABCA1O95477 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC13.14□□□□□ -0.31
ABCA1O95477 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC13.14□□□□□ -0.31
ABCA1O95477 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA1O95477 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC13.14□□□□□ -0.31
ABCA1O95477 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA1O95477 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA1O95477 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
ABCA1O95477 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
ABCA1O95477 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC13.14□□□□□ -0.31
ABCA1O95477 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA1O95477 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA1O95477 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA1O95477 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA1O95477 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA1O95477 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA1O95477 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA1O95477 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
ABCA1O95477 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA1O95477 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA1O95477 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA1O95477 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC13.14□□□□□ -0.31
ABCA1O95477 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
ABCA1O95477 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms