Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
SHOX2O60902 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC15.64■□□□□ 0.1
SHOX2O60902 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC15.64■□□□□ 0.09
SHOX2O60902 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHOX2O60902 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHOX2O60902 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHOX2O60902 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SHOX2O60902 DPP8-202ENST00000321147 3125 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SHOX2O60902 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
SHOX2O60902 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHOX2O60902 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC15.64■□□□□ 0.09
SHOX2O60902 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHOX2O60902 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SHOX2O60902 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SHOX2O60902 MICB-202ENST00000399150 2346 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SHOX2O60902 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHOX2O60902 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHOX2O60902 ISCU-203ENST00000431221 799 ntTSL 2 BASIC15.64■□□□□ 0.09
SHOX2O60902 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC15.64■□□□□ 0.09
SHOX2O60902 AC104819.1-201ENST00000504587 486 ntBASIC15.64■□□□□ 0.09
SHOX2O60902 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC15.64■□□□□ 0.09
SHOX2O60902 PCDHA3-202ENST00000532566 4594 ntBASIC15.64■□□□□ 0.09
SHOX2O60902 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SHOX2O60902 PNN-202ENST00000553331 656 ntTSL 3 BASIC15.64■□□□□ 0.09
SHOX2O60902 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC15.64■□□□□ 0.09
SHOX2O60902 AC002347.1-201ENST00000569543 541 ntBASIC15.64■□□□□ 0.09
SHOX2O60902 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC15.64■□□□□ 0.09
SHOX2O60902 MIR3180-1-201ENST00000580374 94 ntBASIC15.64■□□□□ 0.09
SHOX2O60902 MIR3180-3-201ENST00000584616 94 ntBASIC15.64■□□□□ 0.09
SHOX2O60902 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC15.64■□□□□ 0.09
SHOX2O60902 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHOX2O60902 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
SHOX2O60902 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHOX2O60902 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
SHOX2O60902 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHOX2O60902 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHOX2O60902 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHOX2O60902 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC15.64■□□□□ 0.09
SHOX2O60902 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC15.64■□□□□ 0.09
SHOX2O60902 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHOX2O60902 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHOX2O60902 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHOX2O60902 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHOX2O60902 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC15.64■□□□□ 0.09
SHOX2O60902 RPS6KA2-204ENST00000481261 2297 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SHOX2O60902 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC15.64■□□□□ 0.09
SHOX2O60902 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SHOX2O60902 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHOX2O60902 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHOX2O60902 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SHOX2O60902 NLRP13-201ENST00000342929 3132 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
SHOX2O60902 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SHOX2O60902 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC15.63■□□□□ 0.09
SHOX2O60902 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SHOX2O60902 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
SHOX2O60902 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SHOX2O60902 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SHOX2O60902 TAS1R3-201ENST00000339381 3433 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
SHOX2O60902 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SHOX2O60902 AC004241.5-201ENST00000623870 2448 ntBASIC15.63■□□□□ 0.09
SHOX2O60902 AL691432.1-201ENST00000596308 1422 ntBASIC15.63■□□□□ 0.09
SHOX2O60902 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SHOX2O60902 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SHOX2O60902 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SHOX2O60902 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
SHOX2O60902 AC004945.1-201ENST00000416738 983 ntBASIC15.63■□□□□ 0.09
SHOX2O60902 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
SHOX2O60902 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC15.63■□□□□ 0.09
SHOX2O60902 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC15.63■□□□□ 0.09
SHOX2O60902 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC15.63■□□□□ 0.09
SHOX2O60902 ARTN-206ENST00000472435 402 ntTSL 3 BASIC15.63■□□□□ 0.09
SHOX2O60902 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC15.63■□□□□ 0.09
SHOX2O60902 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC15.63■□□□□ 0.09
SHOX2O60902 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC15.63■□□□□ 0.09
SHOX2O60902 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
SHOX2O60902 AL031055.1-201ENST00000606362 631 ntBASIC15.63■□□□□ 0.09
SHOX2O60902 GGTLC5P-201ENST00000617623 998 ntBASIC15.63■□□□□ 0.09
SHOX2O60902 AC004706.3-202ENST00000621574 984 ntBASIC15.63■□□□□ 0.09
SHOX2O60902 AC114271.1-201ENST00000612689 2813 ntBASIC15.63■□□□□ 0.09
SHOX2O60902 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SHOX2O60902 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SHOX2O60902 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC15.63■□□□□ 0.09
SHOX2O60902 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SHOX2O60902 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SHOX2O60902 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC15.63■□□□□ 0.09
SHOX2O60902 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
SHOX2O60902 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
SHOX2O60902 BEND3P3-201ENST00000611030 2440 ntBASIC15.63■□□□□ 0.09
SHOX2O60902 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC15.63■□□□□ 0.09
SHOX2O60902 CES1P1-201ENST00000421606 1704 ntBASIC15.63■□□□□ 0.09
SHOX2O60902 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.62■□□□□ 0.09
SHOX2O60902 ANO7-202ENST00000402430 2652 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
SHOX2O60902 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC15.62■□□□□ 0.09
SHOX2O60902 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
SHOX2O60902 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
SHOX2O60902 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SHOX2O60902 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
SHOX2O60902 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SHOX2O60902 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
SHOX2O60902 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 704.9 ms