Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
LMX1BO60663 CCDC74BP1-201ENST00000508880 1123 ntBASIC13.79□□□□□ -0.2
LMX1BO60663 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC13.79□□□□□ -0.2
LMX1BO60663 CR383656.12-201ENST00000549567 513 ntBASIC13.79□□□□□ -0.2
LMX1BO60663 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LMX1BO60663 AC009118.2-201ENST00000613275 655 ntBASIC13.79□□□□□ -0.2
LMX1BO60663 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
LMX1BO60663 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
LMX1BO60663 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
LMX1BO60663 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LMX1BO60663 POLL-217ENST00000628479 1953 ntTSL 5 BASIC13.79□□□□□ -0.2
LMX1BO60663 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LMX1BO60663 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
LMX1BO60663 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LMX1BO60663 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
LMX1BO60663 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LMX1BO60663 POR-201ENST00000394893 2532 ntTSL 5 BASIC13.79□□□□□ -0.2
LMX1BO60663 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
LMX1BO60663 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LMX1BO60663 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC13.78□□□□□ -0.2
LMX1BO60663 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
LMX1BO60663 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
LMX1BO60663 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC13.78□□□□□ -0.2
LMX1BO60663 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC13.78□□□□□ -0.2
LMX1BO60663 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC13.78□□□□□ -0.2
LMX1BO60663 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC13.78□□□□□ -0.2
LMX1BO60663 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
LMX1BO60663 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
LMX1BO60663 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC13.78□□□□□ -0.2
LMX1BO60663 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
LMX1BO60663 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LMX1BO60663 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LMX1BO60663 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
LMX1BO60663 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LMX1BO60663 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
LMX1BO60663 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC13.78□□□□□ -0.2
LMX1BO60663 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
LMX1BO60663 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
LMX1BO60663 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
LMX1BO60663 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
LMX1BO60663 PP14571-201ENST00000404327 934 ntTSL 2 BASIC13.78□□□□□ -0.2
LMX1BO60663 PIN1P1-201ENST00000412108 996 ntBASIC13.78□□□□□ -0.2
LMX1BO60663 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC13.78□□□□□ -0.2
LMX1BO60663 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC13.78□□□□□ -0.2
LMX1BO60663 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
LMX1BO60663 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC13.78□□□□□ -0.2
LMX1BO60663 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC13.78□□□□□ -0.2
LMX1BO60663 AC027369.6-201ENST00000525520 931 ntBASIC13.78□□□□□ -0.2
LMX1BO60663 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC13.78□□□□□ -0.2
LMX1BO60663 MIR4453-201ENST00000584019 89 ntBASIC13.78□□□□□ -0.2
LMX1BO60663 SSH2-211ENST00000590153 570 ntTSL 4 BASIC13.78□□□□□ -0.2
LMX1BO60663 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
LMX1BO60663 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
LMX1BO60663 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
LMX1BO60663 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LMX1BO60663 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC13.78□□□□□ -0.2
LMX1BO60663 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
LMX1BO60663 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
LMX1BO60663 CYP4F24P-201ENST00000586049 1580 ntBASIC13.78□□□□□ -0.2
LMX1BO60663 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LMX1BO60663 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LMX1BO60663 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LMX1BO60663 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
LMX1BO60663 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC13.78□□□□□ -0.2
LMX1BO60663 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC13.78□□□□□ -0.2
LMX1BO60663 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
LMX1BO60663 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC13.78□□□□□ -0.2
LMX1BO60663 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LMX1BO60663 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC13.78□□□□□ -0.2
LMX1BO60663 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LMX1BO60663 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
LMX1BO60663 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
LMX1BO60663 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC13.78□□□□□ -0.2
LMX1BO60663 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC13.77□□□□□ -0.2
LMX1BO60663 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
LMX1BO60663 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.2
LMX1BO60663 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.2
LMX1BO60663 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
LMX1BO60663 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
LMX1BO60663 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
LMX1BO60663 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LMX1BO60663 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
LMX1BO60663 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
LMX1BO60663 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
LMX1BO60663 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
LMX1BO60663 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
LMX1BO60663 MIR346-201ENST00000362234 95 ntBASIC13.77□□□□□ -0.21
LMX1BO60663 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LMX1BO60663 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
LMX1BO60663 AC004987.2-201ENST00000395959 1148 ntBASIC13.77□□□□□ -0.21
LMX1BO60663 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LMX1BO60663 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC13.77□□□□□ -0.21
LMX1BO60663 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
LMX1BO60663 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
LMX1BO60663 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC13.77□□□□□ -0.21
LMX1BO60663 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC13.77□□□□□ -0.21
LMX1BO60663 AC092580.3-201ENST00000430932 139 ntBASIC13.77□□□□□ -0.21
LMX1BO60663 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC13.77□□□□□ -0.21
LMX1BO60663 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
LMX1BO60663 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 11.4 ms