Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NPHP1O15259 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
NPHP1O15259 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
NPHP1O15259 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NPHP1O15259 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
NPHP1O15259 CYP2AB1P-202ENST00000454440 1456 ntBASIC19.67■□□□□ 0.74
NPHP1O15259 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
NPHP1O15259 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NPHP1O15259 ALOX12P2-203ENST00000570921 1945 ntBASIC19.66■□□□□ 0.74
NPHP1O15259 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
NPHP1O15259 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NPHP1O15259 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
NPHP1O15259 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
NPHP1O15259 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC19.66■□□□□ 0.74
NPHP1O15259 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
NPHP1O15259 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
NPHP1O15259 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
NPHP1O15259 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NPHP1O15259 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
NPHP1O15259 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC19.66■□□□□ 0.74
NPHP1O15259 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC19.66■□□□□ 0.74
NPHP1O15259 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NPHP1O15259 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
NPHP1O15259 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC19.66■□□□□ 0.74
NPHP1O15259 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC19.66■□□□□ 0.74
NPHP1O15259 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
NPHP1O15259 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC19.66■□□□□ 0.74
NPHP1O15259 AC107373.2-201ENST00000607735 490 ntBASIC19.66■□□□□ 0.74
NPHP1O15259 AC138951.2-201ENST00000623455 1161 ntBASIC19.66■□□□□ 0.74
NPHP1O15259 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NPHP1O15259 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NPHP1O15259 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
NPHP1O15259 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
NPHP1O15259 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NPHP1O15259 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
NPHP1O15259 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
NPHP1O15259 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
NPHP1O15259 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NPHP1O15259 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
NPHP1O15259 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NPHP1O15259 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC19.66■□□□□ 0.74
NPHP1O15259 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NPHP1O15259 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NPHP1O15259 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NPHP1O15259 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NPHP1O15259 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
NPHP1O15259 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC19.65■□□□□ 0.74
NPHP1O15259 MIR600HG-201ENST00000449175 5984 ntBASIC19.65■□□□□ 0.74
NPHP1O15259 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NPHP1O15259 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
NPHP1O15259 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
NPHP1O15259 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
NPHP1O15259 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
NPHP1O15259 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NPHP1O15259 ACKR1-201ENST00000368121 1240 ntBASIC19.65■□□□□ 0.74
NPHP1O15259 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
NPHP1O15259 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NPHP1O15259 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
NPHP1O15259 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC19.65■□□□□ 0.74
NPHP1O15259 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC19.65■□□□□ 0.74
NPHP1O15259 AC006033.1-201ENST00000440505 426 ntBASIC19.65■□□□□ 0.74
NPHP1O15259 Z93015.1-201ENST00000451718 390 ntBASIC19.65■□□□□ 0.74
NPHP1O15259 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC19.65■□□□□ 0.74
NPHP1O15259 AP001258.2-201ENST00000529891 490 ntBASIC19.65■□□□□ 0.74
NPHP1O15259 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC19.65■□□□□ 0.74
NPHP1O15259 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
NPHP1O15259 KSR1-207ENST00000578981 748 ntTSL 4 BASIC19.65■□□□□ 0.74
NPHP1O15259 AC000095.1-201ENST00000603208 874 ntBASIC19.65■□□□□ 0.74
NPHP1O15259 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC19.65■□□□□ 0.74
NPHP1O15259 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC19.65■□□□□ 0.74
NPHP1O15259 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC19.65■□□□□ 0.74
NPHP1O15259 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC19.65■□□□□ 0.74
NPHP1O15259 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NPHP1O15259 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
NPHP1O15259 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NPHP1O15259 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC19.65■□□□□ 0.74
NPHP1O15259 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
NPHP1O15259 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
NPHP1O15259 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NPHP1O15259 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
NPHP1O15259 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC19.64■□□□□ 0.74
NPHP1O15259 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
NPHP1O15259 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
NPHP1O15259 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC19.64■□□□□ 0.74
NPHP1O15259 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC19.64■□□□□ 0.73
NPHP1O15259 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP1O15259 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP1O15259 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP1O15259 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP1O15259 HLA-DPB2-205ENST00000435074 1188 ntBASIC19.64■□□□□ 0.73
NPHP1O15259 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC19.64■□□□□ 0.73
NPHP1O15259 AC104306.2-201ENST00000451877 341 ntBASIC19.64■□□□□ 0.73
NPHP1O15259 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC19.64■□□□□ 0.73
NPHP1O15259 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC19.64■□□□□ 0.73
NPHP1O15259 AC026410.3-201ENST00000514280 936 ntBASIC19.64■□□□□ 0.73
NPHP1O15259 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP1O15259 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP1O15259 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP1O15259 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
NPHP1O15259 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms