Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 UBALD1-205ENST00000590891 2641 ntBASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 AL138799.1-201ENST00000448213 1675 ntBASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 AC005915.1-201ENST00000624912 2018 ntBASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 FNTAP2-201ENST00000430308 634 ntBASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 POM121L10P-201ENST00000436994 1285 ntBASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 AC005077.2-201ENST00000449786 690 ntBASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 ADM-202ENST00000524948 584 ntTSL 2 BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 AC079328.1-201ENST00000560358 952 ntBASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 RN7SL48P-201ENST00000579283 293 ntBASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 CYGB-203ENST00000589145 788 ntTSL 3 BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PCDHGA1Q9Y5H4 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PCDHGA1Q9Y5H4 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PCDHGA1Q9Y5H4 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
PCDHGA1Q9Y5H4 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PCDHGA1Q9Y5H4 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
PCDHGA1Q9Y5H4 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PCDHGA1Q9Y5H4 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PCDHGA1Q9Y5H4 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC14.96□□□□□ -0.01
PCDHGA1Q9Y5H4 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
PCDHGA1Q9Y5H4 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PCDHGA1Q9Y5H4 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PCDHGA1Q9Y5H4 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC14.96□□□□□ -0.01
PCDHGA1Q9Y5H4 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PCDHGA1Q9Y5H4 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PCDHGA1Q9Y5H4 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
PCDHGA1Q9Y5H4 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PCDHGA1Q9Y5H4 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PCDHGA1Q9Y5H4 ACTBP8-201ENST00000403258 1108 ntBASIC14.96□□□□□ -0.01
PCDHGA1Q9Y5H4 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC14.96□□□□□ -0.01
PCDHGA1Q9Y5H4 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC14.96□□□□□ -0.01
PCDHGA1Q9Y5H4 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC14.96□□□□□ -0.01
PCDHGA1Q9Y5H4 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC14.96□□□□□ -0.01
PCDHGA1Q9Y5H4 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC14.96□□□□□ -0.01
PCDHGA1Q9Y5H4 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PCDHGA1Q9Y5H4 HCG18-245ENST00000602550 559 ntTSL 4 BASIC14.96□□□□□ -0.01
PCDHGA1Q9Y5H4 ETV2-208ENST00000621247 941 ntTSL 5 BASIC14.96□□□□□ -0.01
PCDHGA1Q9Y5H4 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PCDHGA1Q9Y5H4 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PCDHGA1Q9Y5H4 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC14.96□□□□□ -0.01
PCDHGA1Q9Y5H4 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
PCDHGA1Q9Y5H4 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PCDHGA1Q9Y5H4 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PCDHGA1Q9Y5H4 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.02
PCDHGA1Q9Y5H4 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC14.96□□□□□ -0.02
PCDHGA1Q9Y5H4 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
PCDHGA1Q9Y5H4 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.02
PCDHGA1Q9Y5H4 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.02
PCDHGA1Q9Y5H4 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
PCDHGA1Q9Y5H4 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 66.7 ms