Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC15.23■□□□□ 0.03
VPS4AQ9UN37 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC15.23■□□□□ 0.03
VPS4AQ9UN37 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC15.23■□□□□ 0.03
VPS4AQ9UN37 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VPS4AQ9UN37 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VPS4AQ9UN37 MIR6799-201ENST00000620297 69 ntBASIC15.23■□□□□ 0.03
VPS4AQ9UN37 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS4AQ9UN37 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC15.23■□□□□ 0.03
VPS4AQ9UN37 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS4AQ9UN37 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
VPS4AQ9UN37 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS4AQ9UN37 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
VPS4AQ9UN37 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC15.23■□□□□ 0.03
VPS4AQ9UN37 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
VPS4AQ9UN37 CICP13-201ENST00000422015 2789 ntBASIC15.23■□□□□ 0.03
VPS4AQ9UN37 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS4AQ9UN37 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS4AQ9UN37 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4AQ9UN37 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4AQ9UN37 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4AQ9UN37 AC136621.1-201ENST00000624017 2304 ntBASIC15.22■□□□□ 0.03
VPS4AQ9UN37 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4AQ9UN37 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4AQ9UN37 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
VPS4AQ9UN37 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4AQ9UN37 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4AQ9UN37 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4AQ9UN37 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
VPS4AQ9UN37 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
VPS4AQ9UN37 PTPA-220ENST00000436883 532 ntTSL 4 BASIC15.22■□□□□ 0.03
VPS4AQ9UN37 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC15.22■□□□□ 0.03
VPS4AQ9UN37 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC15.22■□□□□ 0.03
VPS4AQ9UN37 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC15.22■□□□□ 0.03
VPS4AQ9UN37 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC15.22■□□□□ 0.03
VPS4AQ9UN37 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC15.22■□□□□ 0.03
VPS4AQ9UN37 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC15.22■□□□□ 0.03
VPS4AQ9UN37 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC15.22■□□□□ 0.03
VPS4AQ9UN37 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC15.22■□□□□ 0.03
VPS4AQ9UN37 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC15.22■□□□□ 0.03
VPS4AQ9UN37 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC15.22■□□□□ 0.03
VPS4AQ9UN37 MIR4453-201ENST00000584019 89 ntBASIC15.22■□□□□ 0.03
VPS4AQ9UN37 SRP9-204ENST00000619790 377 ntTSL 2 BASIC15.22■□□□□ 0.03
VPS4AQ9UN37 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC15.22■□□□□ 0.03
VPS4AQ9UN37 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4AQ9UN37 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4AQ9UN37 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC15.22■□□□□ 0.03
VPS4AQ9UN37 TMBIM7P-203ENST00000641617 1718 ntBASIC15.22■□□□□ 0.03
VPS4AQ9UN37 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC15.22■□□□□ 0.03
VPS4AQ9UN37 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC15.22■□□□□ 0.03
VPS4AQ9UN37 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC15.22■□□□□ 0.03
VPS4AQ9UN37 GRAMD4P3-201ENST00000621665 1669 ntBASIC15.22■□□□□ 0.03
VPS4AQ9UN37 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4AQ9UN37 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC15.22■□□□□ 0.03
VPS4AQ9UN37 SSR4P1-203ENST00000599569 2260 ntBASIC15.22■□□□□ 0.03
VPS4AQ9UN37 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC15.22■□□□□ 0.03
VPS4AQ9UN37 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC15.21■□□□□ 0.03
VPS4AQ9UN37 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC15.21■□□□□ 0.03
VPS4AQ9UN37 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC15.21■□□□□ 0.03
VPS4AQ9UN37 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC15.21■□□□□ 0.03
VPS4AQ9UN37 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4AQ9UN37 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4AQ9UN37 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4AQ9UN37 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4AQ9UN37 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.21■□□□□ 0.03
VPS4AQ9UN37 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4AQ9UN37 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4AQ9UN37 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4AQ9UN37 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC15.21■□□□□ 0.03
VPS4AQ9UN37 AC022144.1-201ENST00000602255 1580 ntBASIC15.21■□□□□ 0.03
VPS4AQ9UN37 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC15.21■□□□□ 0.03
VPS4AQ9UN37 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4AQ9UN37 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC15.21■□□□□ 0.03
VPS4AQ9UN37 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4AQ9UN37 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4AQ9UN37 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4AQ9UN37 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4AQ9UN37 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4AQ9UN37 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC15.21■□□□□ 0.03
VPS4AQ9UN37 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC15.21■□□□□ 0.03
VPS4AQ9UN37 SSH2-210ENST00000582084 560 ntTSL 3 BASIC15.21■□□□□ 0.03
VPS4AQ9UN37 AC008267.7-201ENST00000624570 1194 ntBASIC15.21■□□□□ 0.03
VPS4AQ9UN37 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4AQ9UN37 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4AQ9UN37 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4AQ9UN37 NARF-206ENST00000457415 1668 ntTSL 5 BASIC15.21■□□□□ 0.03
VPS4AQ9UN37 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4AQ9UN37 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
VPS4AQ9UN37 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4AQ9UN37 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4AQ9UN37 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.21■□□□□ 0.03
VPS4AQ9UN37 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.02
VPS4AQ9UN37 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
VPS4AQ9UN37 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
VPS4AQ9UN37 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC15.21■□□□□ 0.02
VPS4AQ9UN37 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
VPS4AQ9UN37 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
VPS4AQ9UN37 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
VPS4AQ9UN37 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC15.21■□□□□ 0.02
VPS4AQ9UN37 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC15.21■□□□□ 0.02
VPS4AQ9UN37 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms