Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 MGST3-203ENST00000367885 680 ntTSL 2 BASIC16.73■□□□□ 0.27
CNTN3Q9P232 AC005229.1-201ENST00000392885 409 ntBASIC16.73■□□□□ 0.27
CNTN3Q9P232 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CNTN3Q9P232 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC16.73■□□□□ 0.27
CNTN3Q9P232 AC012441.1-201ENST00000446669 685 ntBASIC16.73■□□□□ 0.27
CNTN3Q9P232 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC16.73■□□□□ 0.27
CNTN3Q9P232 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC16.73■□□□□ 0.27
CNTN3Q9P232 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC16.73■□□□□ 0.27
CNTN3Q9P232 AC022137.2-201ENST00000503482 481 ntBASIC16.73■□□□□ 0.27
CNTN3Q9P232 AP001889.1-201ENST00000525414 633 ntBASIC16.73■□□□□ 0.27
CNTN3Q9P232 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC16.73■□□□□ 0.27
CNTN3Q9P232 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC16.73■□□□□ 0.27
CNTN3Q9P232 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC16.73■□□□□ 0.27
CNTN3Q9P232 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
CNTN3Q9P232 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CNTN3Q9P232 HLA-DQB2-231ENST00000435145 2026 ntBASIC16.73■□□□□ 0.27
CNTN3Q9P232 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
CNTN3Q9P232 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
CNTN3Q9P232 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CNTN3Q9P232 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
CNTN3Q9P232 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
CNTN3Q9P232 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CNTN3Q9P232 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC16.73■□□□□ 0.27
CNTN3Q9P232 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.73■□□□□ 0.27
CNTN3Q9P232 MSTO2P-201ENST00000314835 1709 ntBASIC16.73■□□□□ 0.27
CNTN3Q9P232 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
CNTN3Q9P232 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CNTN3Q9P232 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC16.72■□□□□ 0.27
CNTN3Q9P232 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CNTN3Q9P232 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC16.72■□□□□ 0.27
CNTN3Q9P232 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CNTN3Q9P232 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CNTN3Q9P232 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CNTN3Q9P232 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CNTN3Q9P232 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CNTN3Q9P232 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CNTN3Q9P232 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CNTN3Q9P232 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CNTN3Q9P232 PRAL-201ENST00000624952 3286 ntBASIC16.72■□□□□ 0.27
CNTN3Q9P232 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CNTN3Q9P232 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CNTN3Q9P232 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC16.72■□□□□ 0.27
CNTN3Q9P232 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CNTN3Q9P232 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CNTN3Q9P232 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CNTN3Q9P232 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CNTN3Q9P232 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC16.72■□□□□ 0.27
CNTN3Q9P232 BAATP1-201ENST00000412284 1225 ntBASIC16.72■□□□□ 0.27
CNTN3Q9P232 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC16.72■□□□□ 0.27
CNTN3Q9P232 AC244107.1-201ENST00000442033 332 ntBASIC16.72■□□□□ 0.27
CNTN3Q9P232 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC16.72■□□□□ 0.27
CNTN3Q9P232 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC16.72■□□□□ 0.27
CNTN3Q9P232 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC16.72■□□□□ 0.27
CNTN3Q9P232 AP001582.1-201ENST00000525856 295 ntBASIC16.72■□□□□ 0.27
CNTN3Q9P232 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CNTN3Q9P232 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
CNTN3Q9P232 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC16.72■□□□□ 0.27
CNTN3Q9P232 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC16.72■□□□□ 0.27
CNTN3Q9P232 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC16.72■□□□□ 0.27
CNTN3Q9P232 AL645728.2-202ENST00000641679 227 ntBASIC16.72■□□□□ 0.27
CNTN3Q9P232 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.72■□□□□ 0.27
CNTN3Q9P232 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CNTN3Q9P232 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CNTN3Q9P232 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC16.72■□□□□ 0.27
CNTN3Q9P232 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CNTN3Q9P232 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.72■□□□□ 0.27
CNTN3Q9P232 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC16.72■□□□□ 0.27
CNTN3Q9P232 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CNTN3Q9P232 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.72■□□□□ 0.27
CNTN3Q9P232 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CNTN3Q9P232 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC16.72■□□□□ 0.27
CNTN3Q9P232 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
CNTN3Q9P232 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CNTN3Q9P232 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CNTN3Q9P232 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
CNTN3Q9P232 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC16.71■□□□□ 0.27
CNTN3Q9P232 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC16.71■□□□□ 0.27
CNTN3Q9P232 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.71■□□□□ 0.27
CNTN3Q9P232 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CNTN3Q9P232 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CNTN3Q9P232 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC16.71■□□□□ 0.27
CNTN3Q9P232 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.71■□□□□ 0.27
CNTN3Q9P232 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
CNTN3Q9P232 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
CNTN3Q9P232 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CNTN3Q9P232 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.71■□□□□ 0.27
CNTN3Q9P232 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CNTN3Q9P232 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CNTN3Q9P232 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
CNTN3Q9P232 RPL5P21-201ENST00000404620 815 ntBASIC16.71■□□□□ 0.27
CNTN3Q9P232 KRT43P-201ENST00000434019 910 ntBASIC16.71■□□□□ 0.27
CNTN3Q9P232 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC16.71■□□□□ 0.27
CNTN3Q9P232 CROCCP4-201ENST00000457096 498 ntBASIC16.71■□□□□ 0.27
CNTN3Q9P232 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CNTN3Q9P232 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC16.71■□□□□ 0.27
CNTN3Q9P232 IFT20-216ENST00000588477 774 ntTSL 5 BASIC16.71■□□□□ 0.27
CNTN3Q9P232 AC017083.2-201ENST00000608069 979 ntBASIC16.71■□□□□ 0.27
CNTN3Q9P232 AL022328.1-201ENST00000610050 478 ntBASIC16.71■□□□□ 0.27
CNTN3Q9P232 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CNTN3Q9P232 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms