Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VTA1Q9NP79 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
VTA1Q9NP79 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VTA1Q9NP79 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC17.33■□□□□ 0.36
VTA1Q9NP79 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
VTA1Q9NP79 CNN2P10-201ENST00000443067 918 ntBASIC17.33■□□□□ 0.36
VTA1Q9NP79 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
VTA1Q9NP79 RPSAP36-202ENST00000494591 1261 ntBASIC17.33■□□□□ 0.36
VTA1Q9NP79 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC17.33■□□□□ 0.36
VTA1Q9NP79 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC17.33■□□□□ 0.36
VTA1Q9NP79 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC17.33■□□□□ 0.36
VTA1Q9NP79 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VTA1Q9NP79 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
VTA1Q9NP79 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
VTA1Q9NP79 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VTA1Q9NP79 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VTA1Q9NP79 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VTA1Q9NP79 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC17.33■□□□□ 0.36
VTA1Q9NP79 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VTA1Q9NP79 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VTA1Q9NP79 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
VTA1Q9NP79 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VTA1Q9NP79 AL158070.2-201ENST00000623713 1621 ntBASIC17.32■□□□□ 0.36
VTA1Q9NP79 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VTA1Q9NP79 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VTA1Q9NP79 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VTA1Q9NP79 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
VTA1Q9NP79 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VTA1Q9NP79 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VTA1Q9NP79 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VTA1Q9NP79 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VTA1Q9NP79 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VTA1Q9NP79 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
VTA1Q9NP79 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC17.32■□□□□ 0.36
VTA1Q9NP79 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC17.32■□□□□ 0.36
VTA1Q9NP79 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC17.32■□□□□ 0.36
VTA1Q9NP79 OARD1-212ENST00000482515 832 ntTSL 2 BASIC17.32■□□□□ 0.36
VTA1Q9NP79 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC17.32■□□□□ 0.36
VTA1Q9NP79 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VTA1Q9NP79 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC17.32■□□□□ 0.36
VTA1Q9NP79 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC17.32■□□□□ 0.36
VTA1Q9NP79 CYGB-203ENST00000589145 788 ntTSL 3 BASIC17.32■□□□□ 0.36
VTA1Q9NP79 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC17.32■□□□□ 0.36
VTA1Q9NP79 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC17.32■□□□□ 0.36
VTA1Q9NP79 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VTA1Q9NP79 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VTA1Q9NP79 AC079328.2-201ENST00000561241 3354 ntBASIC17.32■□□□□ 0.36
VTA1Q9NP79 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VTA1Q9NP79 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VTA1Q9NP79 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
VTA1Q9NP79 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VTA1Q9NP79 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VTA1Q9NP79 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VTA1Q9NP79 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VTA1Q9NP79 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VTA1Q9NP79 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VTA1Q9NP79 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VTA1Q9NP79 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VTA1Q9NP79 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
VTA1Q9NP79 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VTA1Q9NP79 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VTA1Q9NP79 GRN-222ENST00000639447 1314 ntTSL 2 BASIC17.31■□□□□ 0.36
VTA1Q9NP79 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
VTA1Q9NP79 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
VTA1Q9NP79 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VTA1Q9NP79 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VTA1Q9NP79 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC17.31■□□□□ 0.36
VTA1Q9NP79 LSM5-207ENST00000410044 687 ntTSL 3 BASIC17.31■□□□□ 0.36
VTA1Q9NP79 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC17.31■□□□□ 0.36
VTA1Q9NP79 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC17.31■□□□□ 0.36
VTA1Q9NP79 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC17.31■□□□□ 0.36
VTA1Q9NP79 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
VTA1Q9NP79 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC17.31■□□□□ 0.36
VTA1Q9NP79 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VTA1Q9NP79 AC006449.5-201ENST00000610658 2098 ntBASIC17.31■□□□□ 0.36
VTA1Q9NP79 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
VTA1Q9NP79 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
VTA1Q9NP79 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC17.31■□□□□ 0.36
VTA1Q9NP79 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC17.31■□□□□ 0.36
VTA1Q9NP79 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.31■□□□□ 0.36
VTA1Q9NP79 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC17.31■□□□□ 0.36
VTA1Q9NP79 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VTA1Q9NP79 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VTA1Q9NP79 AC127383.1-201ENST00000444697 1800 ntBASIC17.31■□□□□ 0.36
VTA1Q9NP79 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC17.3■□□□□ 0.36
VTA1Q9NP79 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
VTA1Q9NP79 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
VTA1Q9NP79 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VTA1Q9NP79 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.3■□□□□ 0.36
VTA1Q9NP79 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC17.3■□□□□ 0.36
VTA1Q9NP79 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
VTA1Q9NP79 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VTA1Q9NP79 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
VTA1Q9NP79 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
VTA1Q9NP79 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC17.3■□□□□ 0.36
VTA1Q9NP79 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC17.3■□□□□ 0.36
VTA1Q9NP79 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VTA1Q9NP79 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC17.3■□□□□ 0.36
VTA1Q9NP79 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC17.3■□□□□ 0.36
VTA1Q9NP79 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms