Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC19.68■□□□□ 0.74
SHANK3Q9BYB0 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 MVK-214ENST00000629016 1591 ntTSL 5 BASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 STK33-217ENST00000534493 1895 ntTSL 2 BASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 AL157791.1-201ENST00000553667 1699 ntBASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 PFN2-202ENST00000423691 911 ntTSL 2 BASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 AC019193.1-201ENST00000506678 823 ntBASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 SNORD3B-2-202ENST00000571722 791 ntBASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 AC006449.5-201ENST00000610658 2098 ntBASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHANK3Q9BYB0 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 CYP2T1P-202ENST00000641596 2535 ntBASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 Z97180.1-201ENST00000445173 988 ntBASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 IGLV3-15-201ENST00000518356 244 ntBASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 MIR3677-201ENST00000578964 60 ntBASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 AC012044.1-201ENST00000603431 297 ntBASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 AL136295.7-201ENST00000619226 1200 ntBASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 AC092127.1-201ENST00000567093 3455 ntBASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 CAP2P1-201ENST00000557743 1390 ntBASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHANK3Q9BYB0 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC19.65■□□□□ 0.74
SHANK3Q9BYB0 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHANK3Q9BYB0 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SHANK3Q9BYB0 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC19.65■□□□□ 0.74
SHANK3Q9BYB0 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC19.65■□□□□ 0.74
SHANK3Q9BYB0 CFL1-206ENST00000527344 962 ntTSL 2 BASIC19.65■□□□□ 0.74
SHANK3Q9BYB0 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC19.65■□□□□ 0.74
SHANK3Q9BYB0 RN7SL736P-201ENST00000613111 269 ntBASIC19.65■□□□□ 0.74
SHANK3Q9BYB0 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC19.65■□□□□ 0.74
SHANK3Q9BYB0 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHANK3Q9BYB0 PCDHA14-201ENST00000506751 2298 ntBASIC19.65■□□□□ 0.74
SHANK3Q9BYB0 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC19.65■□□□□ 0.74
SHANK3Q9BYB0 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHANK3Q9BYB0 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHANK3Q9BYB0 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHANK3Q9BYB0 KRT8P21-201ENST00000430398 1491 ntBASIC19.65■□□□□ 0.74
SHANK3Q9BYB0 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHANK3Q9BYB0 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHANK3Q9BYB0 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHANK3Q9BYB0 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SHANK3Q9BYB0 CDC23-208ENST00000505120 455 ntTSL 3 BASIC19.65■□□□□ 0.74
SHANK3Q9BYB0 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC19.65■□□□□ 0.74
SHANK3Q9BYB0 CTBP2P4-201ENST00000513884 920 ntBASIC19.65■□□□□ 0.74
SHANK3Q9BYB0 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC19.65■□□□□ 0.74
SHANK3Q9BYB0 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 65.9 ms