Protein–RNA interactions for Protein: Q9BT76

UPK3B, Uroplakin-3b, humanhuman

Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3BQ9BT76 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC10.97□□□□□ -0.65
UPK3BQ9BT76 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
UPK3BQ9BT76 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC10.97□□□□□ -0.65
UPK3BQ9BT76 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
UPK3BQ9BT76 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC10.97□□□□□ -0.65
UPK3BQ9BT76 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC10.97□□□□□ -0.65
UPK3BQ9BT76 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC10.97□□□□□ -0.65
UPK3BQ9BT76 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC10.97□□□□□ -0.65
UPK3BQ9BT76 AL137784.3-201ENST00000623858 2288 ntBASIC10.97□□□□□ -0.65
UPK3BQ9BT76 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
UPK3BQ9BT76 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
UPK3BQ9BT76 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
UPK3BQ9BT76 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
UPK3BQ9BT76 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
UPK3BQ9BT76 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
UPK3BQ9BT76 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
UPK3BQ9BT76 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC10.97□□□□□ -0.65
UPK3BQ9BT76 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC10.97□□□□□ -0.65
UPK3BQ9BT76 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 AL009178.2-201ENST00000597278 2719 ntBASIC10.96□□□□□ -0.65
UPK3BQ9BT76 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 KRT8P37-201ENST00000451609 1420 ntBASIC10.96□□□□□ -0.65
UPK3BQ9BT76 AL391825.1-201ENST00000457671 1364 ntBASIC10.96□□□□□ -0.65
UPK3BQ9BT76 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 GOLGA6L11P-201ENST00000417252 1298 ntBASIC10.96□□□□□ -0.65
UPK3BQ9BT76 MEP1AP4-201ENST00000423244 1087 ntBASIC10.96□□□□□ -0.65
UPK3BQ9BT76 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 TAF8-206ENST00000472818 719 ntTSL 2 BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 AC093004.1-201ENST00000508850 424 ntBASIC10.96□□□□□ -0.65
UPK3BQ9BT76 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 SPIB-207ENST00000597855 564 ntTSL 4 BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
UPK3BQ9BT76 AL358472.5-202ENST00000641448 1267 ntBASIC10.96□□□□□ -0.65
UPK3BQ9BT76 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.66
UPK3BQ9BT76 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
UPK3BQ9BT76 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
UPK3BQ9BT76 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
UPK3BQ9BT76 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC10.96□□□□□ -0.66
UPK3BQ9BT76 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
UPK3BQ9BT76 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC10.96□□□□□ -0.66
UPK3BQ9BT76 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC10.96□□□□□ -0.66
UPK3BQ9BT76 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.66
UPK3BQ9BT76 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC10.96□□□□□ -0.66
UPK3BQ9BT76 AC006449.6-201ENST00000612330 2296 ntBASIC10.96□□□□□ -0.66
UPK3BQ9BT76 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC10.96□□□□□ -0.66
UPK3BQ9BT76 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.66
UPK3BQ9BT76 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
UPK3BQ9BT76 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
UPK3BQ9BT76 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC10.96□□□□□ -0.66
UPK3BQ9BT76 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC10.96□□□□□ -0.66
UPK3BQ9BT76 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
UPK3BQ9BT76 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC10.96□□□□□ -0.66
UPK3BQ9BT76 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC10.96□□□□□ -0.66
UPK3BQ9BT76 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC10.95□□□□□ -0.66
UPK3BQ9BT76 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC10.95□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms