Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 AP001160.2-201ENST00000596071 487 ntBASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 AC105339.1-204ENST00000636249 355 ntBASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 AC084121.4-201ENST00000641598 221 ntBASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 AF228730.8-201ENST00000642140 221 ntBASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 MYO15B-237ENST00000642007 4893 ntBASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 ELL2P1-201ENST00000413990 1906 ntBASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 KRT8P37-201ENST00000451609 1420 ntBASIC16.02■□□□□ 0.16
TRIM56Q9BRZ2 AC106881.1-201ENST00000605849 3329 ntBASIC16.02■□□□□ 0.16
TRIM56Q9BRZ2 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC16.02■□□□□ 0.16
TRIM56Q9BRZ2 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM56Q9BRZ2 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM56Q9BRZ2 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM56Q9BRZ2 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM56Q9BRZ2 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM56Q9BRZ2 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM56Q9BRZ2 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC16.02■□□□□ 0.16
TRIM56Q9BRZ2 SBF1P1-201ENST00000444527 5631 ntBASIC16.02■□□□□ 0.16
TRIM56Q9BRZ2 STK33-217ENST00000534493 1895 ntTSL 2 BASIC16.02■□□□□ 0.16
TRIM56Q9BRZ2 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM56Q9BRZ2 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC16.02■□□□□ 0.16
TRIM56Q9BRZ2 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM56Q9BRZ2 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM56Q9BRZ2 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM56Q9BRZ2 COA5-202ENST00000409997 557 ntTSL 4 BASIC16.02■□□□□ 0.16
TRIM56Q9BRZ2 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC16.02■□□□□ 0.16
TRIM56Q9BRZ2 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC16.02■□□□□ 0.16
TRIM56Q9BRZ2 AC112482.1-201ENST00000492080 688 ntBASIC16.02■□□□□ 0.16
TRIM56Q9BRZ2 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC16.02■□□□□ 0.16
TRIM56Q9BRZ2 KRT8P23-201ENST00000560090 1207 ntBASIC16.02■□□□□ 0.16
TRIM56Q9BRZ2 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC16.02■□□□□ 0.16
TRIM56Q9BRZ2 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC16.02■□□□□ 0.16
TRIM56Q9BRZ2 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRIM56Q9BRZ2 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRIM56Q9BRZ2 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRIM56Q9BRZ2 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
TRIM56Q9BRZ2 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRIM56Q9BRZ2 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC16.02■□□□□ 0.15
TRIM56Q9BRZ2 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRIM56Q9BRZ2 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
TRIM56Q9BRZ2 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRIM56Q9BRZ2 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC16.02■□□□□ 0.15
TRIM56Q9BRZ2 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRIM56Q9BRZ2 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRIM56Q9BRZ2 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRIM56Q9BRZ2 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 COCH-203ENST00000460581 2688 ntTSL 2 BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 RAC2-202ENST00000401529 569 ntTSL 4 BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 AZGP1P1-201ENST00000411909 902 ntBASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 MKNK2P1-201ENST00000437526 628 ntBASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 URGCP-206ENST00000446958 365 ntTSL 2 BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 AC004967.1-201ENST00000453589 447 ntBASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 DHDH-204ENST00000523250 634 ntTSL 5 BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 HNRNPUP1-201ENST00000554987 333 ntBASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 NAA38-207ENST00000576861 556 ntTSL 3 BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 MIR4469-201ENST00000583919 79 ntBASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 MTDHP5-201ENST00000598980 586 ntBASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 AL450472.2-201ENST00000603663 1156 ntBASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 AC097359.3-201ENST00000603982 1210 ntBASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
TRIM56Q9BRZ2 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms