Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC15.88■□□□□ 0.13
SHROOM3Q8TF72 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
SHROOM3Q8TF72 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHROOM3Q8TF72 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHROOM3Q8TF72 RNU1-114P-201ENST00000365297 166 ntBASIC15.88■□□□□ 0.13
SHROOM3Q8TF72 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC15.88■□□□□ 0.13
SHROOM3Q8TF72 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
SHROOM3Q8TF72 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC15.88■□□□□ 0.13
SHROOM3Q8TF72 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SHROOM3Q8TF72 AC055876.2-201ENST00000531834 546 ntBASIC15.88■□□□□ 0.13
SHROOM3Q8TF72 AC036164.1-201ENST00000570544 333 ntBASIC15.88■□□□□ 0.13
SHROOM3Q8TF72 AC004233.3-201ENST00000607794 1269 ntBASIC15.88■□□□□ 0.13
SHROOM3Q8TF72 Six3os1_5.1-201ENST00000611000 271 ntBASIC15.88■□□□□ 0.13
SHROOM3Q8TF72 TEX48-202ENST00000612244 662 ntTSL 3 BASIC15.88■□□□□ 0.13
SHROOM3Q8TF72 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHROOM3Q8TF72 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SHROOM3Q8TF72 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHROOM3Q8TF72 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHROOM3Q8TF72 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC15.88■□□□□ 0.13
SHROOM3Q8TF72 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC15.88■□□□□ 0.13
SHROOM3Q8TF72 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHROOM3Q8TF72 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHROOM3Q8TF72 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHROOM3Q8TF72 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHROOM3Q8TF72 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
SHROOM3Q8TF72 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SHROOM3Q8TF72 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHROOM3Q8TF72 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHROOM3Q8TF72 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 AC104457.1-201ENST00000401024 814 ntBASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 OSM-203ENST00000403463 464 ntTSL 3 BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 BRI3BPP1-201ENST00000594224 787 ntBASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 MIR6805-201ENST00000615055 62 ntBASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 AC093525.8-201ENST00000624099 1342 ntBASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 PARP8-218ENST00000513738 596 ntTSL 4 BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 GPR39-203ENST00000622084 900 ntTSL 5 BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
SHROOM3Q8TF72 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 AL391825.1-201ENST00000457671 1364 ntBASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 FAM86MP-201ENST00000340703 885 ntBASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 CDK4-206ENST00000549606 558 ntTSL 2 BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 NAA38-206ENST00000576384 424 ntTSL 2 BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC15.86■□□□□ 0.13
SHROOM3Q8TF72 AC000095.1-201ENST00000603208 874 ntBASIC15.86■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms