Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 EDF1-203ENST00000371649 790 ntTSL 2 BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 GRAP-202ENST00000395635 834 ntTSL 2 BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 COX5BP8-201ENST00000416911 349 ntBASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 GSAP-205ENST00000430584 600 ntTSL 5 BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 RN7SL752P-201ENST00000463779 287 ntBASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 POLE2-203ENST00000553805 496 ntTSL 2 BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 PAM16-204ENST00000571941 674 ntTSL 3 BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 HADH-212ENST00000638621 741 ntTSL 5 BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 ING5-213ENST00000636051 4199 ntTSL 5 BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
C9orf40Q8IXQ3 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 HNRNPA1P48-201ENST00000562726 1377 ntBASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 TMBIM7P-203ENST00000641617 1718 ntBASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 C1QBPP1-201ENST00000400117 770 ntBASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 SUN1-204ENST00000403868 978 ntTSL 2 BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 RPL5P21-201ENST00000404620 815 ntBASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 PTPA-220ENST00000436883 532 ntTSL 4 BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 AC133539.2-201ENST00000604757 467 ntBASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC14.36□□□□□ -0.11
C9orf40Q8IXQ3 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms