Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LIM2P55344 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
LIM2P55344 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LIM2P55344 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC14.84□□□□□ -0.03
LIM2P55344 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC14.84□□□□□ -0.03
LIM2P55344 HMGN1P19-201ENST00000436976 333 ntBASIC14.84□□□□□ -0.03
LIM2P55344 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC14.84□□□□□ -0.03
LIM2P55344 TSPY16P-201ENST00000449843 468 ntBASIC14.84□□□□□ -0.03
LIM2P55344 AL589987.1-201ENST00000453380 819 ntBASIC14.84□□□□□ -0.03
LIM2P55344 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC14.84□□□□□ -0.03
LIM2P55344 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC14.84□□□□□ -0.03
LIM2P55344 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC14.84□□□□□ -0.03
LIM2P55344 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LIM2P55344 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
LIM2P55344 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
LIM2P55344 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
LIM2P55344 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LIM2P55344 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LIM2P55344 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC14.84□□□□□ -0.03
LIM2P55344 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC14.84□□□□□ -0.03
LIM2P55344 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
LIM2P55344 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
LIM2P55344 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
LIM2P55344 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
LIM2P55344 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
LIM2P55344 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
LIM2P55344 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.03
LIM2P55344 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
LIM2P55344 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LIM2P55344 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
LIM2P55344 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC14.83□□□□□ -0.04
LIM2P55344 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LIM2P55344 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LIM2P55344 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LIM2P55344 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
LIM2P55344 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC14.83□□□□□ -0.04
LIM2P55344 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
LIM2P55344 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
LIM2P55344 MEIS3P1-201ENST00000495167 958 ntBASIC14.83□□□□□ -0.04
LIM2P55344 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC14.83□□□□□ -0.04
LIM2P55344 ARL16-202ENST00000570561 768 ntTSL 2 BASIC14.83□□□□□ -0.04
LIM2P55344 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.04
LIM2P55344 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC14.83□□□□□ -0.04
LIM2P55344 AC004790.1-201ENST00000612686 536 ntBASIC14.83□□□□□ -0.04
LIM2P55344 AC009118.2-201ENST00000613275 655 ntBASIC14.83□□□□□ -0.04
LIM2P55344 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
LIM2P55344 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
LIM2P55344 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
LIM2P55344 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
LIM2P55344 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC14.83□□□□□ -0.04
LIM2P55344 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC14.83□□□□□ -0.04
LIM2P55344 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC14.83□□□□□ -0.04
LIM2P55344 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.04
LIM2P55344 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LIM2P55344 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LIM2P55344 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC14.83□□□□□ -0.04
LIM2P55344 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
LIM2P55344 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
LIM2P55344 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LIM2P55344 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LIM2P55344 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
LIM2P55344 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC14.83□□□□□ -0.04
LIM2P55344 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIM2P55344 AC138969.3-201ENST00000546612 1459 ntBASIC14.82□□□□□ -0.04
LIM2P55344 AC138932.2-201ENST00000548268 1459 ntBASIC14.82□□□□□ -0.04
LIM2P55344 AC126755.4-201ENST00000549796 1459 ntBASIC14.82□□□□□ -0.04
LIM2P55344 LINC02228-204ENST00000642115 2962 ntBASIC14.82□□□□□ -0.04
LIM2P55344 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIM2P55344 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LIM2P55344 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
LIM2P55344 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
LIM2P55344 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIM2P55344 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC14.82□□□□□ -0.04
LIM2P55344 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC14.82□□□□□ -0.04
LIM2P55344 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LIM2P55344 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC14.82□□□□□ -0.04
LIM2P55344 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LIM2P55344 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIM2P55344 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
LIM2P55344 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
LIM2P55344 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIM2P55344 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIM2P55344 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LIM2P55344 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIM2P55344 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIM2P55344 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIM2P55344 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LIM2P55344 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC14.82□□□□□ -0.04
LIM2P55344 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.82□□□□□ -0.04
LIM2P55344 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC14.82□□□□□ -0.04
LIM2P55344 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC14.82□□□□□ -0.04
LIM2P55344 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LIM2P55344 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LIM2P55344 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC14.82□□□□□ -0.04
LIM2P55344 DOC2GP-202ENST00000514950 1163 ntBASIC14.82□□□□□ -0.04
LIM2P55344 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIM2P55344 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIM2P55344 FTH1-202ENST00000526640 786 ntTSL 2 BASIC14.82□□□□□ -0.04
LIM2P55344 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC14.82□□□□□ -0.04
LIM2P55344 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms