Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 LRRFIP1P1-201ENST00000498774 2246 ntBASIC11.82□□□□□ -0.52
FOXA3P55318 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
FOXA3P55318 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA3P55318 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC11.82□□□□□ -0.52
FOXA3P55318 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA3P55318 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
FOXA3P55318 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC11.82□□□□□ -0.52
FOXA3P55318 AC127383.1-201ENST00000444697 1800 ntBASIC11.82□□□□□ -0.52
FOXA3P55318 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA3P55318 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA3P55318 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA3P55318 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA3P55318 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA3P55318 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA3P55318 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA3P55318 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC11.82□□□□□ -0.52
FOXA3P55318 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA3P55318 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA3P55318 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC11.82□□□□□ -0.52
FOXA3P55318 PMS2P4-201ENST00000412466 1052 ntBASIC11.82□□□□□ -0.52
FOXA3P55318 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC11.82□□□□□ -0.52
FOXA3P55318 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC11.82□□□□□ -0.52
FOXA3P55318 LTBR-211ENST00000543190 785 ntTSL 3 BASIC11.82□□□□□ -0.52
FOXA3P55318 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC11.82□□□□□ -0.52
FOXA3P55318 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC11.82□□□□□ -0.52
FOXA3P55318 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
FOXA3P55318 AP002414.4-201ENST00000589764 1148 ntBASIC11.82□□□□□ -0.52
FOXA3P55318 AP001269.4-201ENST00000609611 512 ntBASIC11.82□□□□□ -0.52
FOXA3P55318 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC11.82□□□□□ -0.52
FOXA3P55318 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC11.82□□□□□ -0.52
FOXA3P55318 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA3P55318 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA3P55318 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC11.82□□□□□ -0.52
FOXA3P55318 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
FOXA3P55318 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA3P55318 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA3P55318 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA3P55318 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA3P55318 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA3P55318 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA3P55318 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA3P55318 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC11.82□□□□□ -0.52
FOXA3P55318 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA3P55318 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC11.82□□□□□ -0.52
FOXA3P55318 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA3P55318 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC11.81□□□□□ -0.52
FOXA3P55318 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA3P55318 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC11.81□□□□□ -0.52
FOXA3P55318 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA3P55318 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA3P55318 AC023024.2-201ENST00000623561 1993 ntBASIC11.81□□□□□ -0.52
FOXA3P55318 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
FOXA3P55318 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA3P55318 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
FOXA3P55318 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC11.81□□□□□ -0.52
FOXA3P55318 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC11.81□□□□□ -0.52
FOXA3P55318 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA3P55318 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA3P55318 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA3P55318 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
FOXA3P55318 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA3P55318 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA3P55318 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC11.81□□□□□ -0.52
FOXA3P55318 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC11.81□□□□□ -0.52
FOXA3P55318 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA3P55318 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
FOXA3P55318 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA3P55318 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC11.81□□□□□ -0.52
FOXA3P55318 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
FOXA3P55318 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC11.81□□□□□ -0.52
FOXA3P55318 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA3P55318 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA3P55318 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA3P55318 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA3P55318 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC11.81□□□□□ -0.52
FOXA3P55318 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA3P55318 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA3P55318 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC11.81□□□□□ -0.52
FOXA3P55318 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC11.81□□□□□ -0.52
FOXA3P55318 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
FOXA3P55318 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC11.81□□□□□ -0.52
FOXA3P55318 TSSC2-201ENST00000450217 709 ntBASIC11.81□□□□□ -0.52
FOXA3P55318 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC11.81□□□□□ -0.52
FOXA3P55318 PTK2-216ENST00000519881 863 ntTSL 3 BASIC11.81□□□□□ -0.52
FOXA3P55318 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC11.81□□□□□ -0.52
FOXA3P55318 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC11.81□□□□□ -0.52
FOXA3P55318 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC11.81□□□□□ -0.52
FOXA3P55318 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC11.81□□□□□ -0.52
FOXA3P55318 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC11.81□□□□□ -0.52
FOXA3P55318 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
FOXA3P55318 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA3P55318 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC11.81□□□□□ -0.52
FOXA3P55318 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
FOXA3P55318 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA3P55318 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC11.81□□□□□ -0.52
FOXA3P55318 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
FOXA3P55318 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA3P55318 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA3P55318 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA3P55318 AC134407.2-201ENST00000625089 1978 ntBASIC11.81□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms