Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
EPHB3P54753 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
EPHB3P54753 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
EPHB3P54753 AP003680.1-201ENST00000598970 3660 ntBASIC16.24■□□□□ 0.19
EPHB3P54753 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
EPHB3P54753 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
EPHB3P54753 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
EPHB3P54753 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
EPHB3P54753 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC16.24■□□□□ 0.19
EPHB3P54753 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
EPHB3P54753 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC16.24■□□□□ 0.19
EPHB3P54753 CNN2P8-201ENST00000421872 913 ntBASIC16.24■□□□□ 0.19
EPHB3P54753 AC026954.1-201ENST00000429771 1293 ntBASIC16.24■□□□□ 0.19
EPHB3P54753 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
EPHB3P54753 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
EPHB3P54753 AC114812.1-204ENST00000449669 728 ntBASIC16.24■□□□□ 0.19
EPHB3P54753 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC16.24■□□□□ 0.19
EPHB3P54753 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC16.24■□□□□ 0.19
EPHB3P54753 AHRR-211ENST00000515206 462 ntTSL 5 BASIC16.24■□□□□ 0.19
EPHB3P54753 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC16.24■□□□□ 0.19
EPHB3P54753 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC16.24■□□□□ 0.19
EPHB3P54753 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC16.24■□□□□ 0.19
EPHB3P54753 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC16.24■□□□□ 0.19
EPHB3P54753 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC16.24■□□□□ 0.19
EPHB3P54753 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC16.24■□□□□ 0.19
EPHB3P54753 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC16.24■□□□□ 0.19
EPHB3P54753 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.24■□□□□ 0.19
EPHB3P54753 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.24■□□□□ 0.19
EPHB3P54753 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
EPHB3P54753 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
EPHB3P54753 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
EPHB3P54753 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
EPHB3P54753 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
EPHB3P54753 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
EPHB3P54753 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
EPHB3P54753 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
EPHB3P54753 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.24■□□□□ 0.19
EPHB3P54753 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
EPHB3P54753 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
EPHB3P54753 ILF3-AS1-201ENST00000591501 1983 ntBASIC16.24■□□□□ 0.19
EPHB3P54753 AL603832.2-201ENST00000566195 2125 ntBASIC16.24■□□□□ 0.19
EPHB3P54753 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC16.24■□□□□ 0.19
EPHB3P54753 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.24■□□□□ 0.19
EPHB3P54753 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
EPHB3P54753 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
EPHB3P54753 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.23■□□□□ 0.19
EPHB3P54753 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
EPHB3P54753 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC16.23■□□□□ 0.19
EPHB3P54753 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC16.23■□□□□ 0.19
EPHB3P54753 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
EPHB3P54753 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
EPHB3P54753 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
EPHB3P54753 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
EPHB3P54753 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
EPHB3P54753 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC16.23■□□□□ 0.19
EPHB3P54753 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.23■□□□□ 0.19
EPHB3P54753 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
EPHB3P54753 GUK1-206ENST00000366723 845 ntTSL 5 BASIC16.23■□□□□ 0.19
EPHB3P54753 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
EPHB3P54753 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
EPHB3P54753 PFN2-205ENST00000461868 613 ntTSL 2 BASIC16.23■□□□□ 0.19
EPHB3P54753 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
EPHB3P54753 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC16.23■□□□□ 0.19
EPHB3P54753 PACS1-203ENST00000524815 628 ntTSL 4 BASIC16.23■□□□□ 0.19
EPHB3P54753 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC16.23■□□□□ 0.19
EPHB3P54753 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
EPHB3P54753 AC023310.1-201ENST00000554836 735 ntBASIC16.23■□□□□ 0.19
EPHB3P54753 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC16.23■□□□□ 0.19
EPHB3P54753 MIR4525-201ENST00000580000 75 ntBASIC16.23■□□□□ 0.19
EPHB3P54753 MIR4538-201ENST00000581377 78 ntBASIC16.23■□□□□ 0.19
EPHB3P54753 INO80C-210ENST00000590757 595 ntTSL 2 BASIC16.23■□□□□ 0.19
EPHB3P54753 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC16.23■□□□□ 0.19
EPHB3P54753 AC132938.4-201ENST00000623835 848 ntBASIC16.23■□□□□ 0.19
EPHB3P54753 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
EPHB3P54753 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
EPHB3P54753 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
EPHB3P54753 ACE-203ENST00000413513 2237 ntTSL 2 BASIC16.23■□□□□ 0.19
EPHB3P54753 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
EPHB3P54753 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
EPHB3P54753 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC16.23■□□□□ 0.19
EPHB3P54753 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
EPHB3P54753 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
EPHB3P54753 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
EPHB3P54753 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
EPHB3P54753 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
EPHB3P54753 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
EPHB3P54753 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
EPHB3P54753 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
EPHB3P54753 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
EPHB3P54753 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
EPHB3P54753 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
EPHB3P54753 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
EPHB3P54753 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
EPHB3P54753 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
EPHB3P54753 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
EPHB3P54753 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
EPHB3P54753 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
EPHB3P54753 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC16.22■□□□□ 0.19
EPHB3P54753 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.22■□□□□ 0.19
EPHB3P54753 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms