Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIG3P49916 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIG3P49916 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIG3P49916 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIG3P49916 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIG3P49916 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC16.56■□□□□ 0.24
LIG3P49916 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIG3P49916 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIG3P49916 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
LIG3P49916 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.55■□□□□ 0.24
LIG3P49916 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
LIG3P49916 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIG3P49916 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
LIG3P49916 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIG3P49916 AC232323.1-201ENST00000540724 2099 ntBASIC16.55■□□□□ 0.24
LIG3P49916 REXO1L5P-201ENST00000622260 2098 ntBASIC16.55■□□□□ 0.24
LIG3P49916 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC16.55■□□□□ 0.24
LIG3P49916 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC16.55■□□□□ 0.24
LIG3P49916 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC16.55■□□□□ 0.24
LIG3P49916 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIG3P49916 POR-201ENST00000394893 2532 ntTSL 5 BASIC16.55■□□□□ 0.24
LIG3P49916 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIG3P49916 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIG3P49916 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIG3P49916 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIG3P49916 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIG3P49916 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC16.55■□□□□ 0.24
LIG3P49916 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIG3P49916 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIG3P49916 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC16.55■□□□□ 0.24
LIG3P49916 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIG3P49916 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.55■□□□□ 0.24
LIG3P49916 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC16.55■□□□□ 0.24
LIG3P49916 HLA-J-203ENST00000494367 1087 ntBASIC16.55■□□□□ 0.24
LIG3P49916 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC16.55■□□□□ 0.24
LIG3P49916 AC109322.1-201ENST00000524499 1264 ntBASIC16.55■□□□□ 0.24
LIG3P49916 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LIG3P49916 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC16.55■□□□□ 0.24
LIG3P49916 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.55■□□□□ 0.24
LIG3P49916 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC16.55■□□□□ 0.24
LIG3P49916 AC093028.1-201ENST00000622998 982 ntBASIC16.55■□□□□ 0.24
LIG3P49916 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC16.55■□□□□ 0.24
LIG3P49916 LINC00628-201ENST00000628516 1289 ntBASIC16.55■□□□□ 0.24
LIG3P49916 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC16.55■□□□□ 0.24
LIG3P49916 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC16.55■□□□□ 0.24
LIG3P49916 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC16.55■□□□□ 0.24
LIG3P49916 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LIG3P49916 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIG3P49916 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC16.55■□□□□ 0.24
LIG3P49916 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC16.55■□□□□ 0.24
LIG3P49916 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIG3P49916 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC16.55■□□□□ 0.24
LIG3P49916 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIG3P49916 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIG3P49916 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LIG3P49916 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC16.54■□□□□ 0.24
LIG3P49916 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIG3P49916 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LIG3P49916 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIG3P49916 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC16.54■□□□□ 0.24
LIG3P49916 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIG3P49916 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
LIG3P49916 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LIG3P49916 USP28-214ENST00000545540 3431 ntTSL 2 BASIC16.54■□□□□ 0.24
LIG3P49916 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LIG3P49916 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
LIG3P49916 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIG3P49916 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIG3P49916 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
LIG3P49916 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIG3P49916 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC16.54■□□□□ 0.24
LIG3P49916 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC16.54■□□□□ 0.24
LIG3P49916 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC16.54■□□□□ 0.24
LIG3P49916 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIG3P49916 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIG3P49916 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LIG3P49916 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIG3P49916 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIG3P49916 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LIG3P49916 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC16.54■□□□□ 0.24
LIG3P49916 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
LIG3P49916 PTMS-202ENST00000389462 773 ntTSL 2 BASIC16.54■□□□□ 0.24
LIG3P49916 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LIG3P49916 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIG3P49916 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LIG3P49916 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC16.54■□□□□ 0.24
LIG3P49916 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
LIG3P49916 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC16.54■□□□□ 0.24
LIG3P49916 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC16.54■□□□□ 0.24
LIG3P49916 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC16.54■□□□□ 0.24
LIG3P49916 AC027796.2-201ENST00000575326 344 ntBASIC16.54■□□□□ 0.24
LIG3P49916 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC16.54■□□□□ 0.24
LIG3P49916 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC16.54■□□□□ 0.24
LIG3P49916 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC16.54■□□□□ 0.24
LIG3P49916 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
LIG3P49916 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
LIG3P49916 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIG3P49916 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIG3P49916 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC16.54■□□□□ 0.24
LIG3P49916 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms