Protein–RNA interactions for Protein: P48230

TM4SF4, Transmembrane 4 L6 family member 4, humanhuman

Predictions only

Length 202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM4SF4P48230 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TM4SF4P48230 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TM4SF4P48230 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TM4SF4P48230 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC17.42■□□□□ 0.38
TM4SF4P48230 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC17.42■□□□□ 0.38
TM4SF4P48230 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC17.42■□□□□ 0.38
TM4SF4P48230 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC17.42■□□□□ 0.38
TM4SF4P48230 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TM4SF4P48230 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TM4SF4P48230 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TM4SF4P48230 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
TM4SF4P48230 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
TM4SF4P48230 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC17.42■□□□□ 0.38
TM4SF4P48230 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC17.42■□□□□ 0.38
TM4SF4P48230 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC17.42■□□□□ 0.38
TM4SF4P48230 RPL8P2-201ENST00000430538 502 ntBASIC17.42■□□□□ 0.38
TM4SF4P48230 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
TM4SF4P48230 SCARNA21-201ENST00000517026 139 ntBASIC17.42■□□□□ 0.38
TM4SF4P48230 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC17.42■□□□□ 0.38
TM4SF4P48230 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC17.42■□□□□ 0.38
TM4SF4P48230 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
TM4SF4P48230 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC17.42■□□□□ 0.38
TM4SF4P48230 AL109837.1-201ENST00000603272 613 ntBASIC17.42■□□□□ 0.38
TM4SF4P48230 AC008825.2-201ENST00000603374 718 ntBASIC17.42■□□□□ 0.38
TM4SF4P48230 AL161773.1-201ENST00000624845 863 ntBASIC17.42■□□□□ 0.38
TM4SF4P48230 AL645608.8-201ENST00000606034 2086 ntBASIC17.42■□□□□ 0.38
TM4SF4P48230 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TM4SF4P48230 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TM4SF4P48230 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC17.42■□□□□ 0.38
TM4SF4P48230 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC17.42■□□□□ 0.38
TM4SF4P48230 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TM4SF4P48230 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TM4SF4P48230 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TM4SF4P48230 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TM4SF4P48230 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TM4SF4P48230 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TM4SF4P48230 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
TM4SF4P48230 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC17.41■□□□□ 0.38
TM4SF4P48230 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
TM4SF4P48230 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TM4SF4P48230 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
TM4SF4P48230 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TM4SF4P48230 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC17.41■□□□□ 0.38
TM4SF4P48230 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TM4SF4P48230 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
TM4SF4P48230 AC084364.1-201ENST00000551967 1556 ntBASIC17.41■□□□□ 0.38
TM4SF4P48230 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TM4SF4P48230 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.41■□□□□ 0.38
TM4SF4P48230 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TM4SF4P48230 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
TM4SF4P48230 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TM4SF4P48230 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC17.41■□□□□ 0.38
TM4SF4P48230 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TM4SF4P48230 AC018463.1-201ENST00000456674 917 ntBASIC17.41■□□□□ 0.38
TM4SF4P48230 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TM4SF4P48230 AC026434.2-201ENST00000506094 1078 ntBASIC17.41■□□□□ 0.38
TM4SF4P48230 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TM4SF4P48230 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC17.41■□□□□ 0.38
TM4SF4P48230 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
TM4SF4P48230 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC17.41■□□□□ 0.38
TM4SF4P48230 MIR6769A-201ENST00000617340 73 ntBASIC17.41■□□□□ 0.38
TM4SF4P48230 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
TM4SF4P48230 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC17.41■□□□□ 0.38
TM4SF4P48230 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC17.41■□□□□ 0.38
TM4SF4P48230 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TM4SF4P48230 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC17.41■□□□□ 0.38
TM4SF4P48230 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
TM4SF4P48230 AC018695.7-201ENST00000624587 2492 ntBASIC17.41■□□□□ 0.38
TM4SF4P48230 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TM4SF4P48230 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
TM4SF4P48230 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC17.41■□□□□ 0.38
TM4SF4P48230 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC17.4■□□□□ 0.38
TM4SF4P48230 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TM4SF4P48230 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TM4SF4P48230 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TM4SF4P48230 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
TM4SF4P48230 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TM4SF4P48230 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.4■□□□□ 0.38
TM4SF4P48230 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TM4SF4P48230 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TM4SF4P48230 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TM4SF4P48230 AC244394.1-201ENST00000435000 1665 ntBASIC17.4■□□□□ 0.38
TM4SF4P48230 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TM4SF4P48230 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TM4SF4P48230 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TM4SF4P48230 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TM4SF4P48230 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.4■□□□□ 0.38
TM4SF4P48230 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
TM4SF4P48230 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TM4SF4P48230 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TM4SF4P48230 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC17.4■□□□□ 0.38
TM4SF4P48230 AC078875.1-201ENST00000431907 724 ntBASIC17.4■□□□□ 0.38
TM4SF4P48230 AL139008.1-201ENST00000437894 228 ntBASIC17.4■□□□□ 0.38
TM4SF4P48230 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC17.4■□□□□ 0.38
TM4SF4P48230 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC17.4■□□□□ 0.38
TM4SF4P48230 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC17.4■□□□□ 0.38
TM4SF4P48230 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TM4SF4P48230 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
TM4SF4P48230 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TM4SF4P48230 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms