Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
RFC3P40938 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RFC3P40938 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
RFC3P40938 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RFC3P40938 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
RFC3P40938 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RFC3P40938 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RFC3P40938 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RFC3P40938 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RFC3P40938 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RFC3P40938 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RFC3P40938 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
RFC3P40938 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC14.37□□□□□ -0.11
RFC3P40938 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RFC3P40938 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RFC3P40938 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC14.36□□□□□ -0.11
RFC3P40938 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFC3P40938 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC14.36□□□□□ -0.11
RFC3P40938 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFC3P40938 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC14.36□□□□□ -0.11
RFC3P40938 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC14.36□□□□□ -0.11
RFC3P40938 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFC3P40938 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RFC3P40938 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFC3P40938 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RFC3P40938 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RFC3P40938 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFC3P40938 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFC3P40938 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC14.36□□□□□ -0.11
RFC3P40938 USP40-206ENST00000443711 628 ntTSL 2 BASIC14.36□□□□□ -0.11
RFC3P40938 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC14.36□□□□□ -0.11
RFC3P40938 GLI4-203ENST00000517468 963 ntTSL 5 BASIC14.36□□□□□ -0.11
RFC3P40938 AC092552.1-201ENST00000547243 906 ntBASIC14.36□□□□□ -0.11
RFC3P40938 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC14.36□□□□□ -0.11
RFC3P40938 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC14.36□□□□□ -0.11
RFC3P40938 RRP7BP-205ENST00000566851 833 ntBASIC14.36□□□□□ -0.11
RFC3P40938 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RFC3P40938 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC14.36□□□□□ -0.11
RFC3P40938 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
RFC3P40938 TMEM261P1-201ENST00000604899 340 ntBASIC14.36□□□□□ -0.11
RFC3P40938 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC14.36□□□□□ -0.11
RFC3P40938 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFC3P40938 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
RFC3P40938 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFC3P40938 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFC3P40938 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFC3P40938 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
RFC3P40938 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RFC3P40938 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
RFC3P40938 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC14.36□□□□□ -0.11
RFC3P40938 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RFC3P40938 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
RFC3P40938 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
RFC3P40938 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFC3P40938 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC14.35□□□□□ -0.11
RFC3P40938 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFC3P40938 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFC3P40938 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC14.35□□□□□ -0.11
RFC3P40938 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
RFC3P40938 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFC3P40938 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RFC3P40938 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
RFC3P40938 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RFC3P40938 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFC3P40938 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC14.35□□□□□ -0.11
RFC3P40938 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFC3P40938 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFC3P40938 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC14.35□□□□□ -0.11
RFC3P40938 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFC3P40938 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC14.35□□□□□ -0.11
RFC3P40938 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFC3P40938 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFC3P40938 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFC3P40938 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC14.35□□□□□ -0.11
RFC3P40938 PKIG-203ENST00000372887 769 ntTSL 3 BASIC14.35□□□□□ -0.11
RFC3P40938 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
RFC3P40938 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC14.35□□□□□ -0.11
RFC3P40938 AC112492.5-201ENST00000421897 457 ntBASIC14.35□□□□□ -0.11
RFC3P40938 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC14.35□□□□□ -0.11
RFC3P40938 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFC3P40938 SLED1-202ENST00000512051 380 ntBASIC14.35□□□□□ -0.11
RFC3P40938 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC14.35□□□□□ -0.11
RFC3P40938 KRT17P8-201ENST00000540749 863 ntBASIC14.35□□□□□ -0.11
RFC3P40938 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC14.35□□□□□ -0.11
RFC3P40938 PAM16-204ENST00000571941 674 ntTSL 3 BASIC14.35□□□□□ -0.11
RFC3P40938 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
RFC3P40938 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RFC3P40938 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFC3P40938 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC14.35□□□□□ -0.11
RFC3P40938 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC14.35□□□□□ -0.11
RFC3P40938 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RFC3P40938 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFC3P40938 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RFC3P40938 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RFC3P40938 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RFC3P40938 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC14.35□□□□□ -0.11
RFC3P40938 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFC3P40938 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFC3P40938 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC14.35□□□□□ -0.11
RFC3P40938 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms